Gene annotation
Transcriptome id Sobic.009G075500.2,Sobic.009G075500.3,Sobic.009G075500.1,Sobic.009G075500.4
Synonym Sb09g006360, AG
Functional annotation OsMADS58 - MADS-box family gene with MIKCc type-box, expressed
UniProt A0A1B6P7A8 , A0A1Z5R1D9 , A0A1B6P7D0 , A0A1B6P792
Pfam PF01486 PF00319
Panther DB PTHR11945 PTHR11945:SF217
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology K09264; MADS-box transcription factor, plant
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT4G18960 : K-box region and MADS-box transcription factor family protein
RAP-DB (Rice) LOC_Os05g11414.1 : OsMADS58 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a025641 , Zm00025a021527 , Zm00025a032331 , Zm00025a047585 , Zm00025a043140 , Zm00025a005260 , Zm00025a005261 , Zm00025a008189 , Zm00025a014307 , Zm00025a054447 , Zm00025a016785 , Zm00025a022983 , Zm00025a035864
Brachypodium PNT65319 , PNT71641 , PNT65320 , KQK15335 , KQK15334 , KQK15336 , KQK03211 , KQK03210 , KQK03213 , KQK03212 , KQK00790 , KQJ99121 , KQJ91889 , KQK07077 , KQK07076 , KQK07078 , KQK22883 , PNT65321 , KQJ90931
Barley HORVU1Hr1G029220.8 , HORVU1Hr1G029220.9 , HORVU1Hr1G029220.2 , HORVU1Hr1G029220.3 , HORVU1Hr1G029220.1 , HORVU1Hr1G029220.6 , HORVU1Hr1G029220.7 , HORVU1Hr1G029220.4 , HORVU1Hr1G029220.5 , HORVU3Hr1G026650.1 , HORVU3Hr1G026650.2 , HORVU3Hr1G026650.3 , HORVU3Hr1G026650.4 , HORVU3Hr1G026650.5 , HORVU3Hr1G026650.6 , HORVU3Hr1G026650.7 , HORVU3Hr1G026650.8 , HORVU3Hr1G026650.9 , HORVU0Hr1G032300.5 , HORVU6Hr1G066140.9 , HORVU6Hr1G066140.8 , HORVU6Hr1G066140.1 , HORVU6Hr1G066140.3 , HORVU6Hr1G066140.2 , HORVU6Hr1G066140.5 , HORVU6Hr1G066140.4 , HORVU6Hr1G066140.7 , HORVU6Hr1G066140.6 , HORVU0Hr1G032300.7 , HORVU0Hr1G032300.4 , HORVU0Hr1G032300.6 , HORVU0Hr1G032300.1 , HORVU0Hr1G032300.2 , HORVU0Hr1G032300.3 , HORVU3Hr1G026650.12 , HORVU3Hr1G026650.13 , HORVU3Hr1G026650.10 , HORVU3Hr1G026650.11
Wheat TraesCS5A02G117500 , TraesCS5A02G117500 , TraesCS6B02G286400 , TraesCS6B02G286400 , TraesCS1D02G203300 , TraesCS1D02G203300 , TraesCS7D02G261600 , TraesCS6B02G286400 , TraesCS7B02G020800 , TraesCS7A02G260900 , TraesCS7D02G120500 , TraesCS3D02G140200 , TraesCS3D02G140200 , TraesCS3D02G140200 , TraesCS3D02G140200 , TraesCS7B02G158600 , TraesCS7D02G120600 , TraesCS3A02G314300 , TraesCS3A02G314300 , TraesCS3A02G314300 , TraesCS6D02G240200 , TraesCS6D02G240200 , TraesCS6D02G240200 , TraesCS5D02G118200 , TraesCS5D02G118200 , TraesCS1D02G127700 , TraesCS1D02G127700 , TraesCS1B02G144800 , TraesCS1B02G144800 , TraesCS2B02G200800 , TraesCS6A02G259000 , TraesCS6A02G259000 , TraesCS6A02G259000 , TraesCS3B02G157500 , TraesCS3B02G157500 , TraesCS3B02G157500 , TraesCS3B02G157500 , TraesCS7A02G122000 , TraesCS2A02G174300 , TraesCS2D02G181400 , TraesCS7D02G261600 , TraesCS5B02G115100 , TraesCS5B02G115100 , TraesCS7A02G260600 , TraesCS7A02G260600 , TraesCS7D02G261900 , TraesCS1A02G125800 , TraesCS1A02G125800 , TraesCS1A02G199600 , TraesCS1A02G199600
Populus -


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cDNA sequences
Sobic.009G075500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G459400 B3 DNA binding domain containing protein, expressed -
2 Sobic.001G216400 nodulin, putative, expressed K07192: flotillin
3 Sobic.009G063700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
4 Sobic.003G092300 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
5 Sobic.002G239101 - -
6 Sobic.006G213900 OsMADS31 - MADS-box family gene with MIKCc type-box, expressed -
7 Sobic.001G158100 MBTB43 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
8 Sobic.003G300000 expressed protein -
9 Sobic.004G056000 OsMADS29 - MADS-box family gene with MIKCc type-box, expressed -
10 Sobic.010G183800 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
11 Sobic.001G419500 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
12 Sobic.009G211300 MATH domain containing protein, expressed -
13 Sobic.005G166100 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
14 Sobic.004G281000 MIKC-type MADS box transcription factors(PubMedID : 19749151)@OsMADS6 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
15 Sobic.006G134700 endoglucanase, putative, expressed -
16 Sobic.003G381100 OsMADS21 - MADS-box family gene with MIKCc type-box, expressed -
17 Sobic.004G234600 expressed protein -
18 Sobic.006G015100 expressed protein -
19 Sobic.005G070101 - -
20 Sobic.004G168000 pectinesterase inhibitor domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic009G075500 Sobic009G075500 Sobic001G459400 Sobic001G459400 Sobic009G075500--Sobic001G459400 Sobic001G216400 Sobic001G216400 Sobic009G075500--Sobic001G216400 Sobic009G063700 Sobic009G063700 Sobic009G075500--Sobic009G063700 Sobic003G092300 Sobic003G092300 Sobic009G075500--Sobic003G092300 Sobic002G239101 Sobic002G239101 Sobic009G075500--Sobic002G239101 Sobic006G213900 Sobic006G213900 Sobic009G075500--Sobic006G213900 Sobic001G158100 Sobic001G158100 Sobic009G075500--Sobic001G158100 Sobic003G300000 Sobic003G300000 Sobic009G075500--Sobic003G300000 Sobic004G056000 Sobic004G056000 Sobic009G075500--Sobic004G056000 Sobic001G459400--Sobic003G092300 Sobic001G459300 Sobic001G459300 Sobic001G459400--Sobic001G459300 Sobic005G070700 Sobic005G070700 Sobic001G459400--Sobic005G070700 Sobic010G183800 Sobic010G183800 Sobic001G459400--Sobic010G183800 Sobic010G048600 Sobic010G048600 Sobic001G459400--Sobic010G048600 Sobic001G459400--Sobic009G075500 Sobic002G078900 Sobic002G078900 Sobic001G459400--Sobic002G078900 Sobic001G459400--Sobic009G063700 Sobic006G015100 Sobic006G015100 Sobic001G459400--Sobic006G015100 Sobic001G216400--Sobic009G075500 Sobic004G234600 Sobic004G234600 Sobic001G216400--Sobic004G234600 Sobic001G216400--Sobic009G063700 Sobic005G166100 Sobic005G166100 Sobic001G216400--Sobic005G166100 Sobic001G419500 Sobic001G419500 Sobic001G216400--Sobic001G419500 Sobic003G381100 Sobic003G381100 Sobic001G216400--Sobic003G381100 Sobic001G216400--Sobic006G213900 Sobic007G193300 Sobic007G193300 Sobic001G216400--Sobic007G193300 Sobic001G216400--Sobic004G056000 Sobic009G063700--Sobic001G158100 Sobic009G063700--Sobic004G056000 Sobic009G063700--Sobic001G459400 Sobic009G063700--Sobic009G075500 Sobic007G128200 Sobic007G128200 Sobic009G063700--Sobic007G128200 Sobic009G063700--Sobic010G183800 Sobic009G063700--Sobic001G216400 Sobic009G063700--Sobic004G234600 Sobic009G063700--Sobic001G419500 Sobic003G092300--Sobic001G459400 Sobic003G092300--Sobic010G183800 Sobic003G092300--Sobic001G459300 Sobic001G106500 Sobic001G106500 Sobic003G092300--Sobic001G106500 Sobic003G092300--Sobic003G300000 Sobic003G092300--Sobic010G048600 Sobic003G092300--Sobic009G075500 Sobic003G092300--Sobic001G158100 Sobic003G092300--Sobic005G070700 Sobic002G159000 Sobic002G159000 Sobic002G239101--Sobic002G159000 Sobic004G168000 Sobic004G168000 Sobic002G239101--Sobic004G168000 Sobic005G070101 Sobic005G070101 Sobic002G239101--Sobic005G070101 Sobic006G134700 Sobic006G134700 Sobic002G239101--Sobic006G134700 Sobic002G239101--Sobic006G213900 Sobic001G235200 Sobic001G235200 Sobic002G239101--Sobic001G235200 Sobic002G239101--Sobic001G459400 Sobic002G239101--Sobic009G075500 Sobic002G239101--Sobic009G063700 Sobic006G213900--Sobic001G235200 Sobic006G213900--Sobic002G239101 Sobic006G213900--Sobic006G134700 Sobic006G213900--Sobic002G159000 Sobic006G213900--Sobic004G168000 Sobic006G213900--Sobic005G070101 Sobic006G213900--Sobic001G216400 Sobic006G213900--Sobic009G075500 Sobic003G063700 Sobic003G063700 Sobic006G213900--Sobic003G063700 Sobic001G158100--Sobic009G063700 Sobic009G211300 Sobic009G211300 Sobic001G158100--Sobic009G211300 Sobic001G158100--Sobic001G459400 Sobic001G158100--Sobic004G056000 Sobic001G158100--Sobic003G092300 Sobic001G158100--Sobic010G183800 Sobic001G158100--Sobic009G075500 Sobic001G158100--Sobic007G128200 Sobic001G158100--Sobic001G216400 Sobic003G300000--Sobic010G183800 Sobic003G300000--Sobic001G459400 Sobic003G300000--Sobic003G092300 Sobic003G300000--Sobic002G078900 Sobic003G300000--Sobic009G063700 Sobic003G300000--Sobic009G075500 Sobic006G271600 Sobic006G271600 Sobic003G300000--Sobic006G271600 Sobic004G281000 Sobic004G281000 Sobic003G300000--Sobic004G281000 Sobic003G300000--Sobic001G419500 Sobic004G056000--Sobic003G381100 Sobic004G056000--Sobic009G063700 Sobic003G020800 Sobic003G020800 Sobic004G056000--Sobic003G020800 Sobic004G056000--Sobic001G158100 Sobic004G056000--Sobic005G166100 Sobic004G056000--Sobic001G216400 Sobic004G056000--Sobic009G075500 Sobic004G056000--Sobic007G128200 Sobic004G056000--Sobic002G239101
Octagon: transcription factors


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