Gene annotation
Transcriptome id Sobic.004G056000.2
Synonym Sb04g004736, ABS, TT16, AGL32
Functional annotation OsMADS29 - MADS-box family gene with MIKCc type-box, expressed
UniProt C5XW43
Pfam PF01486 PF00319
Panther DB PTHR11945 PTHR11945:SF147
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G23260 : K-box region and MADS-box transcription factor family protein
RAP-DB (Rice) LOC_Os02g07430.1 : OsMADS29 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a037382 , Zm00025a016241 , Zm00025a031749 , Zm00025a026557 , Zm00025a019085 , Zm00025a037376 , Zm00025a037368 , Zm00025a044893 , Zm00025a049493
Brachypodium PNT73322 , KQK15335 , KQK15334 , KQK15336 , KQJ93543 , KQK13150 , KQK10905
Barley HORVU6Hr1G032220.8 , HORVU6Hr1G032220.1 , HORVU6Hr1G032220.3 , HORVU6Hr1G032220.2 , HORVU6Hr1G032220.4 , HORVU6Hr1G032220.7 , HORVU6Hr1G032220.6 , HORVU6Hr1G032220.5
Wheat TraesCS7A02G111800 , TraesCS6D02G147400 , TraesCS5D02G401500 , TraesCS5D02G401500 , TraesCS5D02G401500 , TraesCS2B02G200800 , TraesCS6B02G186700 , TraesCS7A02G111900 , TraesCS5A02G391700 , TraesCS5A02G391700 , TraesCS6A02G158100 , TraesCS5B02G396600 , TraesCS5B02G396600 , TraesCS2A02G174300 , TraesCS2D02G181400 , TraesCS6A02G011700 , TraesCS6A02G011700
Populus -


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cDNA sequences
Sobic.004G056000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G381100 OsMADS21 - MADS-box family gene with MIKCc type-box, expressed -
2 Sobic.009G063700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
3 Sobic.003G020800 - -
4 Sobic.001G158100 MBTB43 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
5 Sobic.005G166100 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
6 Sobic.001G216400 nodulin, putative, expressed K07192: flotillin
7 Sobic.009G075500 OsMADS58 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
8 Sobic.007G128200 expressed protein -
9 Sobic.002G239101 - -
10 Sobic.009G211300 MATH domain containing protein, expressed -
11 Sobic.003G063700 - -
12 Sobic.004G234600 expressed protein -
13 Sobic.001G141900 OsSub53 - Putative Subtilisin homologue, expressed -
14 Sobic.001G235200 MYB family transcription factor, putative, expressed -
15 Sobic.007G043000 transcription factor X1, putative, expressed -
16 Sobic.006G097300 F-box protein FBW2, putative, expressed -
17 Sobic.004G254100 pleiotropic drug resistance protein, putative, expressed -
18 Sobic.006G213900 OsMADS31 - MADS-box family gene with MIKCc type-box, expressed -
19 Sobic.001G459400 B3 DNA binding domain containing protein, expressed -
20 Sobic.007G193300 OsMADS7 - MADS-box family gene with MIKCc type-box, expressed -


Gene co-expression network
sample Sobic004G056000 Sobic004G056000 Sobic003G381100 Sobic003G381100 Sobic004G056000--Sobic003G381100 Sobic009G063700 Sobic009G063700 Sobic004G056000--Sobic009G063700 Sobic003G020800 Sobic003G020800 Sobic004G056000--Sobic003G020800 Sobic001G158100 Sobic001G158100 Sobic004G056000--Sobic001G158100 Sobic005G166100 Sobic005G166100 Sobic004G056000--Sobic005G166100 Sobic001G216400 Sobic001G216400 Sobic004G056000--Sobic001G216400 Sobic009G075500 Sobic009G075500 Sobic004G056000--Sobic009G075500 Sobic007G128200 Sobic007G128200 Sobic004G056000--Sobic007G128200 Sobic002G239101 Sobic002G239101 Sobic004G056000--Sobic002G239101 Sobic003G381100--Sobic004G056000 Sobic003G381100--Sobic001G216400 Sobic008G072900 Sobic008G072900 Sobic003G381100--Sobic008G072900 Sobic003G027200 Sobic003G027200 Sobic003G381100--Sobic003G027200 Sobic006G097300 Sobic006G097300 Sobic003G381100--Sobic006G097300 Sobic004G254100 Sobic004G254100 Sobic003G381100--Sobic004G254100 Sobic007G043000 Sobic007G043000 Sobic003G381100--Sobic007G043000 Sobic003G381100--Sobic005G166100 Sobic007G193300 Sobic007G193300 Sobic003G381100--Sobic007G193300 Sobic009G063700--Sobic001G158100 Sobic009G063700--Sobic004G056000 Sobic001G459400 Sobic001G459400 Sobic009G063700--Sobic001G459400 Sobic009G063700--Sobic009G075500 Sobic009G063700--Sobic007G128200 Sobic010G183800 Sobic010G183800 Sobic009G063700--Sobic010G183800 Sobic009G063700--Sobic001G216400 Sobic004G234600 Sobic004G234600 Sobic009G063700--Sobic004G234600 Sobic001G419500 Sobic001G419500 Sobic009G063700--Sobic001G419500 Sobic003G020800--Sobic004G056000 Sobic003G020800--Sobic009G063700 Sobic003G020800--Sobic001G158100 Sobic003G020800--Sobic007G128200 Sobic003G020800--Sobic003G381100 Sobic003G020800--Sobic010G183800 Sobic003G020800--Sobic005G166100 Sobic001G457600 Sobic001G457600 Sobic003G020800--Sobic001G457600 Sobic003G020800--Sobic004G234600 Sobic001G158100--Sobic009G063700 Sobic009G211300 Sobic009G211300 Sobic001G158100--Sobic009G211300 Sobic001G158100--Sobic001G459400 Sobic001G158100--Sobic004G056000 Sobic003G092300 Sobic003G092300 Sobic001G158100--Sobic003G092300 Sobic001G158100--Sobic010G183800 Sobic001G158100--Sobic009G075500 Sobic001G158100--Sobic007G128200 Sobic001G158100--Sobic001G216400 Sobic005G166100--Sobic001G216400 Sobic005G166100--Sobic004G056000 Sobic005G166100--Sobic009G063700 Sobic005G166100--Sobic007G128200 Sobic005G166100--Sobic003G381100 Sobic005G166100--Sobic009G075500 Sobic005G166100--Sobic001G419500 Sobic005G166100--Sobic007G193300 Sobic005G166100--Sobic006G097300 Sobic001G216400--Sobic009G075500 Sobic001G216400--Sobic004G234600 Sobic001G216400--Sobic009G063700 Sobic001G216400--Sobic005G166100 Sobic001G216400--Sobic001G419500 Sobic001G216400--Sobic003G381100 Sobic006G213900 Sobic006G213900 Sobic001G216400--Sobic006G213900 Sobic001G216400--Sobic007G193300 Sobic001G216400--Sobic004G056000 Sobic009G075500--Sobic001G459400 Sobic009G075500--Sobic001G216400 Sobic009G075500--Sobic009G063700 Sobic009G075500--Sobic003G092300 Sobic009G075500--Sobic002G239101 Sobic009G075500--Sobic006G213900 Sobic009G075500--Sobic001G158100 Sobic003G300000 Sobic003G300000 Sobic009G075500--Sobic003G300000 Sobic009G075500--Sobic004G056000 Sobic007G128200--Sobic004G234600 Sobic007G128200--Sobic009G063700 Sobic010G194600 Sobic010G194600 Sobic007G128200--Sobic010G194600 Sobic007G128200--Sobic001G216400 Sobic007G128200--Sobic001G158100 Sobic007G128200--Sobic001G457600 Sobic007G128200--Sobic004G056000 Sobic007G128200--Sobic005G166100 Sobic007G128200--Sobic007G043000 Sobic002G159000 Sobic002G159000 Sobic002G239101--Sobic002G159000 Sobic004G168000 Sobic004G168000 Sobic002G239101--Sobic004G168000 Sobic005G070101 Sobic005G070101 Sobic002G239101--Sobic005G070101 Sobic006G134700 Sobic006G134700 Sobic002G239101--Sobic006G134700 Sobic002G239101--Sobic006G213900 Sobic001G235200 Sobic001G235200 Sobic002G239101--Sobic001G235200 Sobic002G239101--Sobic001G459400 Sobic002G239101--Sobic009G075500 Sobic002G239101--Sobic009G063700
Octagon: transcription factors


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