Gene annotation
Transcriptome id Sobic.004G234600.2,Sobic.004G234600.1
Synonym
Functional annotation expressed protein
UniProt A0A194YRD1 , A0A1Z5RNU3
Pfam -
Panther DB PTHR33304 PTHR33304:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G02890 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os03g30740.1 : expressed protein
MaizeGDB (Corn) Zm00025a002883
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G234600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G128200 expressed protein -
2 Sobic.001G216400 nodulin, putative, expressed K07192: flotillin
3 Sobic.009G063700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
4 Sobic.002G053350 - -
5 Sobic.001G457600 piwi domain containing protein, expressed -
6 Sobic.001G419500 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
7 Sobic.010G194600 CW-type Zinc Finger, putative, expressed -
8 Sobic.001G158100 MBTB43 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
9 Sobic.010G183800 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
10 Sobic.003G300000 expressed protein -
11 Sobic.006G097300 F-box protein FBW2, putative, expressed -
12 Sobic.004G281000 MIKC-type MADS box transcription factors(PubMedID : 19749151)@OsMADS6 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
13 Sobic.007G193300 OsMADS7 - MADS-box family gene with MIKCc type-box, expressed -
14 Sobic.009G075500 OsMADS58 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
15 Sobic.005G166100 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
16 Sobic.004G056000 OsMADS29 - MADS-box family gene with MIKCc type-box, expressed -
17 Sobic.003G381100 OsMADS21 - MADS-box family gene with MIKCc type-box, expressed -
18 Sobic.001G137800 ankyrin, putative, expressed -
19 Sobic.001G137500 ankyrin, putative, expressed -
20 Sobic.008G137700 XH domain containing protein, expressed -


Gene co-expression network
sample Sobic004G234600 Sobic004G234600 Sobic007G128200 Sobic007G128200 Sobic004G234600--Sobic007G128200 Sobic001G216400 Sobic001G216400 Sobic004G234600--Sobic001G216400 Sobic009G063700 Sobic009G063700 Sobic004G234600--Sobic009G063700 Sobic002G053350 Sobic002G053350 Sobic004G234600--Sobic002G053350 Sobic001G457600 Sobic001G457600 Sobic004G234600--Sobic001G457600 Sobic001G419500 Sobic001G419500 Sobic004G234600--Sobic001G419500 Sobic010G194600 Sobic010G194600 Sobic004G234600--Sobic010G194600 Sobic001G158100 Sobic001G158100 Sobic004G234600--Sobic001G158100 Sobic010G183800 Sobic010G183800 Sobic004G234600--Sobic010G183800 Sobic007G128200--Sobic004G234600 Sobic007G128200--Sobic009G063700 Sobic007G128200--Sobic010G194600 Sobic007G128200--Sobic001G216400 Sobic007G128200--Sobic001G158100 Sobic007G128200--Sobic001G457600 Sobic004G056000 Sobic004G056000 Sobic007G128200--Sobic004G056000 Sobic005G166100 Sobic005G166100 Sobic007G128200--Sobic005G166100 Sobic007G043000 Sobic007G043000 Sobic007G128200--Sobic007G043000 Sobic009G075500 Sobic009G075500 Sobic001G216400--Sobic009G075500 Sobic001G216400--Sobic004G234600 Sobic001G216400--Sobic009G063700 Sobic001G216400--Sobic005G166100 Sobic001G216400--Sobic001G419500 Sobic003G381100 Sobic003G381100 Sobic001G216400--Sobic003G381100 Sobic006G213900 Sobic006G213900 Sobic001G216400--Sobic006G213900 Sobic007G193300 Sobic007G193300 Sobic001G216400--Sobic007G193300 Sobic001G216400--Sobic004G056000 Sobic009G063700--Sobic001G158100 Sobic009G063700--Sobic004G056000 Sobic001G459400 Sobic001G459400 Sobic009G063700--Sobic001G459400 Sobic009G063700--Sobic009G075500 Sobic009G063700--Sobic007G128200 Sobic009G063700--Sobic010G183800 Sobic009G063700--Sobic001G216400 Sobic009G063700--Sobic004G234600 Sobic009G063700--Sobic001G419500 Sobic002G053350--Sobic004G234600 Sobic003G088600 Sobic003G088600 Sobic002G053350--Sobic003G088600 Sobic008G137700 Sobic008G137700 Sobic002G053350--Sobic008G137700 Sobic002G053350--Sobic007G128200 Sobic002G053350--Sobic001G216400 Sobic002G053350--Sobic001G419500 Sobic002G053350--Sobic010G194600 Sobic002G053350--Sobic007G193300 Sobic001G137500 Sobic001G137500 Sobic002G053350--Sobic001G137500 Sobic001G457600--Sobic001G137500 Sobic001G457600--Sobic010G194600 Sobic001G457600--Sobic001G419500 Sobic002G258000 Sobic002G258000 Sobic001G457600--Sobic002G258000 Sobic001G457600--Sobic007G128200 Sobic001G457600--Sobic004G234600 Sobic001G457600--Sobic009G063700 Sobic004G281000 Sobic004G281000 Sobic001G457600--Sobic004G281000 Sobic001G457600--Sobic007G193300 Sobic002G178700 Sobic002G178700 Sobic001G419500--Sobic002G178700 Sobic001G419500--Sobic001G137500 Sobic001G419500--Sobic001G216400 Sobic003G006000 Sobic003G006000 Sobic001G419500--Sobic003G006000 Sobic001G419500--Sobic001G457600 Sobic001G419500--Sobic009G063700 Sobic001G419500--Sobic002G258000 Sobic001G419500--Sobic010G194600 Sobic001G419500--Sobic009G075500 Sobic010G194600--Sobic001G457600 Sobic006G271600 Sobic006G271600 Sobic010G194600--Sobic006G271600 Sobic010G194600--Sobic007G128200 Sobic010G194600--Sobic001G137500 Sobic010G194600--Sobic001G419500 Sobic010G194600--Sobic003G088600 Sobic010G194600--Sobic004G234600 Sobic010G194600--Sobic009G063700 Sobic003G300000 Sobic003G300000 Sobic010G194600--Sobic003G300000 Sobic001G158100--Sobic009G063700 Sobic009G211300 Sobic009G211300 Sobic001G158100--Sobic009G211300 Sobic001G158100--Sobic001G459400 Sobic001G158100--Sobic004G056000 Sobic003G092300 Sobic003G092300 Sobic001G158100--Sobic003G092300 Sobic001G158100--Sobic010G183800 Sobic001G158100--Sobic009G075500 Sobic001G158100--Sobic007G128200 Sobic001G158100--Sobic001G216400 Sobic010G183800--Sobic003G092300 Sobic010G183800--Sobic001G459400 Sobic002G078900 Sobic002G078900 Sobic010G183800--Sobic002G078900 Sobic010G183800--Sobic003G300000 Sobic001G456000 Sobic001G456000 Sobic010G183800--Sobic001G456000 Sobic010G183800--Sobic009G063700 Sobic001G071600 Sobic001G071600 Sobic010G183800--Sobic001G071600 Sobic010G183800--Sobic001G158100 Sobic001G106500 Sobic001G106500 Sobic010G183800--Sobic001G106500
Octagon: transcription factors


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