Gene annotation
Transcriptome id Sobic.003G381100.1
Synonym AG, Sb03g042080
Functional annotation OsMADS21 - MADS-box family gene with MIKCc type-box, expressed
UniProt C5XEN4
Pfam PF00319 PF01486
Panther DB PTHR11945 PTHR11945:SF192
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT4G18960 : K-box region and MADS-box transcription factor family protein
RAP-DB (Rice) LOC_Os01g66290.1 : OsMADS21 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a026519
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G056000 OsMADS29 - MADS-box family gene with MIKCc type-box, expressed -
2 Sobic.001G216400 nodulin, putative, expressed K07192: flotillin
3 Sobic.008G072900 OsMADS13 - MADS-box family gene with MIKCc type-box, expressed -
4 Sobic.003G027200 plastocyanin-like domain containing protein, putative, expressed -
5 Sobic.006G097300 F-box protein FBW2, putative, expressed -
6 Sobic.004G254100 pleiotropic drug resistance protein, putative, expressed -
7 Sobic.007G043000 transcription factor X1, putative, expressed -
8 Sobic.005G166100 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
9 Sobic.007G193300 OsMADS7 - MADS-box family gene with MIKCc type-box, expressed -
10 Sobic.009G075500 OsMADS58 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
11 Sobic.002G239000 plastocyanin-like domain containing protein, putative, expressed -
12 Sobic.004G234600 expressed protein -
13 Sobic.009G063700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
14 Sobic.007G128200 expressed protein -
15 Sobic.009G211300 MATH domain containing protein, expressed -
16 Sobic.003G063700 - -
17 Sobic.010G118900 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
18 Sobic.001G158100 MBTB43 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
19 Sobic.003G020800 - -
20 Sobic.002G121900 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2


Gene co-expression network
sample Sobic003G381100 Sobic003G381100 Sobic004G056000 Sobic004G056000 Sobic003G381100--Sobic004G056000 Sobic001G216400 Sobic001G216400 Sobic003G381100--Sobic001G216400 Sobic008G072900 Sobic008G072900 Sobic003G381100--Sobic008G072900 Sobic003G027200 Sobic003G027200 Sobic003G381100--Sobic003G027200 Sobic006G097300 Sobic006G097300 Sobic003G381100--Sobic006G097300 Sobic004G254100 Sobic004G254100 Sobic003G381100--Sobic004G254100 Sobic007G043000 Sobic007G043000 Sobic003G381100--Sobic007G043000 Sobic005G166100 Sobic005G166100 Sobic003G381100--Sobic005G166100 Sobic007G193300 Sobic007G193300 Sobic003G381100--Sobic007G193300 Sobic004G056000--Sobic003G381100 Sobic009G063700 Sobic009G063700 Sobic004G056000--Sobic009G063700 Sobic003G020800 Sobic003G020800 Sobic004G056000--Sobic003G020800 Sobic001G158100 Sobic001G158100 Sobic004G056000--Sobic001G158100 Sobic004G056000--Sobic005G166100 Sobic004G056000--Sobic001G216400 Sobic009G075500 Sobic009G075500 Sobic004G056000--Sobic009G075500 Sobic007G128200 Sobic007G128200 Sobic004G056000--Sobic007G128200 Sobic002G239101 Sobic002G239101 Sobic004G056000--Sobic002G239101 Sobic001G216400--Sobic009G075500 Sobic004G234600 Sobic004G234600 Sobic001G216400--Sobic004G234600 Sobic001G216400--Sobic009G063700 Sobic001G216400--Sobic005G166100 Sobic001G419500 Sobic001G419500 Sobic001G216400--Sobic001G419500 Sobic001G216400--Sobic003G381100 Sobic006G213900 Sobic006G213900 Sobic001G216400--Sobic006G213900 Sobic001G216400--Sobic007G193300 Sobic001G216400--Sobic004G056000 Sobic008G072900--Sobic003G027200 Sobic008G072900--Sobic003G381100 Sobic001G377600 Sobic001G377600 Sobic008G072900--Sobic001G377600 Sobic003G029900 Sobic003G029900 Sobic008G072900--Sobic003G029900 Sobic008G072900--Sobic006G097300 Sobic008G072900--Sobic007G193300 Sobic002G239000 Sobic002G239000 Sobic008G072900--Sobic002G239000 Sobic001G171100 Sobic001G171100 Sobic008G072900--Sobic001G171100 Sobic003G022900 Sobic003G022900 Sobic008G072900--Sobic003G022900 Sobic003G027200--Sobic008G072900 Sobic003G027200--Sobic003G381100 Sobic003G027200--Sobic001G377600 Sobic003G027200--Sobic003G029900 Sobic010G118900 Sobic010G118900 Sobic003G027200--Sobic010G118900 Sobic003G027200--Sobic006G097300 Sobic001G287900 Sobic001G287900 Sobic003G027200--Sobic001G287900 Sobic003G027200--Sobic007G193300 Sobic003G027200--Sobic002G239000 Sobic006G097300--Sobic003G381100 Sobic006G097300--Sobic005G166100 Sobic006G097300--Sobic004G234600 Sobic006G097300--Sobic007G193300 Sobic001G171200 Sobic001G171200 Sobic006G097300--Sobic001G171200 Sobic006G097300--Sobic001G216400 Sobic006G097300--Sobic008G072900 Sobic006G097300--Sobic007G128200 Sobic004G281000 Sobic004G281000 Sobic006G097300--Sobic004G281000 Sobic004G254100--Sobic007G043000 Sobic001G235100 Sobic001G235100 Sobic004G254100--Sobic001G235100 Sobic004G254100--Sobic001G216400 Sobic004G254100--Sobic003G381100 Sobic008G138200 Sobic008G138200 Sobic004G254100--Sobic008G138200 Sobic004G254100--Sobic007G128200 Sobic004G254100--Sobic007G193300 Sobic004G254100--Sobic004G056000 Sobic002G121900 Sobic002G121900 Sobic004G254100--Sobic002G121900 Sobic007G043000--Sobic001G235100 Sobic007G043000--Sobic002G121900 Sobic007G043000--Sobic004G254100 Sobic007G043000--Sobic008G138200 Sobic001G137800 Sobic001G137800 Sobic007G043000--Sobic001G137800 Sobic007G043000--Sobic001G216400 Sobic007G043000--Sobic003G381100 Sobic007G043000--Sobic007G128200 Sobic003G063700 Sobic003G063700 Sobic007G043000--Sobic003G063700 Sobic005G166100--Sobic001G216400 Sobic005G166100--Sobic004G056000 Sobic005G166100--Sobic009G063700 Sobic005G166100--Sobic007G128200 Sobic005G166100--Sobic003G381100 Sobic005G166100--Sobic009G075500 Sobic005G166100--Sobic001G419500 Sobic005G166100--Sobic007G193300 Sobic005G166100--Sobic006G097300 Sobic001G137500 Sobic001G137500 Sobic007G193300--Sobic001G137500 Sobic007G193300--Sobic001G216400 Sobic007G193300--Sobic001G419500 Sobic007G193300--Sobic005G166100 Sobic007G193300--Sobic003G381100 Sobic007G193300--Sobic007G128200 Sobic007G193300--Sobic004G234600 Sobic001G457600 Sobic001G457600 Sobic007G193300--Sobic001G457600 Sobic007G193300--Sobic002G121900
Octagon: transcription factors


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