Gene annotation
Transcriptome id Sobic.007G193300.1
Synonym SEP3, AGL9, Sb07g026200
Functional annotation OsMADS7 - MADS-box family gene with MIKCc type-box, expressed
UniProt C5YHS6
Pfam PF01486 PF00319
Panther DB PTHR11945 PTHR11945:SF167
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G24260 : K-box region and MADS-box transcription factor family protein
RAP-DB (Rice) LOC_Os08g41950.2 : OsMADS7 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a019556 , Zm00025a008194 , Zm00025a021527 , Zm00025a032331 , Zm00025a047585 , Zm00025a043140 , Zm00025a053503 , Zm00025a000309 , Zm00025a005260 , Zm00025a005261 , Zm00025a008189 , Zm00025a014307 , Zm00025a016783 , Zm00025a016785 , Zm00025a022983 , Zm00025a048701 , Zm00025a035864
Brachypodium KQK13148 , KQK15335 , KQK15334 , KQK15336 , KQK03211 , KQK03210 , KQK03213 , KQK03212 , KQK13150 , KQK00790 , KQJ99121 , KQK22883 , KQJ90931
Barley HORVU5Hr1G095710.11 , HORVU5Hr1G095710.10 , HORVU5Hr1G095710.13 , HORVU5Hr1G095710.12 , HORVU0Hr1G032300.5 , HORVU6Hr1G066140.9 , HORVU6Hr1G066140.8 , HORVU6Hr1G066140.1 , HORVU6Hr1G066140.3 , HORVU6Hr1G066140.2 , HORVU6Hr1G066140.5 , HORVU6Hr1G066140.4 , HORVU6Hr1G066140.7 , HORVU6Hr1G066140.6 , HORVU0Hr1G032300.7 , HORVU5Hr1G095630.6 , HORVU5Hr1G095630.7 , HORVU5Hr1G095630.2 , HORVU5Hr1G095630.3 , HORVU5Hr1G095630.1 , HORVU5Hr1G095630.8 , HORVU5Hr1G095630.9 , HORVU0Hr1G032300.4 , HORVU0Hr1G032300.6 , HORVU0Hr1G032300.1 , HORVU0Hr1G032300.2 , HORVU0Hr1G032300.3 , HORVU5Hr1G095710.9 , HORVU5Hr1G095710.8 , HORVU5Hr1G095710.1 , HORVU5Hr1G095710.3 , HORVU5Hr1G095710.5 , HORVU5Hr1G095710.4 , HORVU5Hr1G095710.6 , HORVU5Hr1G076400.4 , HORVU5Hr1G076400.5 , HORVU5Hr1G076400.2 , HORVU5Hr1G076400.3 , HORVU5Hr1G076400.1 , HORVU7Hr1G054220.4 , HORVU7Hr1G054220.5 , HORVU7Hr1G054220.1 , HORVU7Hr1G054220.2 , HORVU7Hr1G054220.3
Wheat TraesCS5B02G396700 , TraesCS6B02G286400 , TraesCS6B02G286400 , TraesCS6B02G286400 , TraesCS1D02G203300 , TraesCS1D02G203300 , TraesCS7A02G122100 , TraesCS7A02G122100 , TraesCS7D02G261600 , TraesCS5D02G294500 , TraesCS5A02G286800 , TraesCS7B02G020800 , TraesCS5D02G401700 , TraesCS7A02G260900 , TraesCS7D02G120500 , TraesCS5B02G286100 , TraesCS5B02G286100 , TraesCS7B02G158600 , TraesCS7D02G120600 , TraesCS7B02G020900 , TraesCS5A02G391800 , TraesCS6D02G240200 , TraesCS6D02G240200 , TraesCS6D02G240200 , TraesCS2B02G200800 , TraesCS6A02G259000 , TraesCS6A02G259000 , TraesCS6A02G259000 , TraesCS7A02G122000 , TraesCS2A02G174300 , TraesCS2D02G181400 , TraesCS7D02G261600 , TraesCS7A02G260600 , TraesCS7A02G260600 , TraesCS7D02G261900 , TraesCS1A02G199600 , TraesCS1A02G199600
Populus -


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cDNA sequences
Sobic.007G193300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G137500 ankyrin, putative, expressed -
2 Sobic.001G216400 nodulin, putative, expressed K07192: flotillin
3 Sobic.001G419500 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
4 Sobic.005G166100 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
5 Sobic.003G381100 OsMADS21 - MADS-box family gene with MIKCc type-box, expressed -
6 Sobic.007G128200 expressed protein -
7 Sobic.004G234600 expressed protein -
8 Sobic.001G457600 piwi domain containing protein, expressed -
9 Sobic.002G121900 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
10 Sobic.006G097300 F-box protein FBW2, putative, expressed -
11 Sobic.007G043000 transcription factor X1, putative, expressed -
12 Sobic.004G254100 pleiotropic drug resistance protein, putative, expressed -
13 Sobic.002G258000 homologous to AGL2 and AGL4: expression analysis and mapping data suggest that it is the ortholog of OsMADS24.(PubMedID : 9065695)@OsMADS8 - MADS-box family gene with MIKCc type-box, expressed -
14 Sobic.001G137400 ankyrin, putative, expressed -
15 Sobic.002G053350 - -
16 Sobic.001G171200 expressed protein -
17 Sobic.004G056000 OsMADS29 - MADS-box family gene with MIKCc type-box, expressed -
18 Sobic.009G063700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
19 Sobic.010G194600 CW-type Zinc Finger, putative, expressed -
20 Sobic.008G072900 OsMADS13 - MADS-box family gene with MIKCc type-box, expressed -


Gene co-expression network
sample Sobic007G193300 Sobic007G193300 Sobic001G137500 Sobic001G137500 Sobic007G193300--Sobic001G137500 Sobic001G216400 Sobic001G216400 Sobic007G193300--Sobic001G216400 Sobic001G419500 Sobic001G419500 Sobic007G193300--Sobic001G419500 Sobic005G166100 Sobic005G166100 Sobic007G193300--Sobic005G166100 Sobic003G381100 Sobic003G381100 Sobic007G193300--Sobic003G381100 Sobic007G128200 Sobic007G128200 Sobic007G193300--Sobic007G128200 Sobic004G234600 Sobic004G234600 Sobic007G193300--Sobic004G234600 Sobic001G457600 Sobic001G457600 Sobic007G193300--Sobic001G457600 Sobic002G121900 Sobic002G121900 Sobic007G193300--Sobic002G121900 Sobic001G137500--Sobic001G419500 Sobic002G258000 Sobic002G258000 Sobic001G137500--Sobic002G258000 Sobic001G137500--Sobic001G457600 Sobic002G178700 Sobic002G178700 Sobic001G137500--Sobic002G178700 Sobic003G006000 Sobic003G006000 Sobic001G137500--Sobic003G006000 Sobic001G137500--Sobic007G193300 Sobic001G137400 Sobic001G137400 Sobic001G137500--Sobic001G137400 Sobic010G194600 Sobic010G194600 Sobic001G137500--Sobic010G194600 Sobic003G088600 Sobic003G088600 Sobic001G137500--Sobic003G088600 Sobic009G075500 Sobic009G075500 Sobic001G216400--Sobic009G075500 Sobic001G216400--Sobic004G234600 Sobic009G063700 Sobic009G063700 Sobic001G216400--Sobic009G063700 Sobic001G216400--Sobic005G166100 Sobic001G216400--Sobic001G419500 Sobic001G216400--Sobic003G381100 Sobic006G213900 Sobic006G213900 Sobic001G216400--Sobic006G213900 Sobic001G216400--Sobic007G193300 Sobic004G056000 Sobic004G056000 Sobic001G216400--Sobic004G056000 Sobic001G419500--Sobic002G178700 Sobic001G419500--Sobic001G137500 Sobic001G419500--Sobic001G216400 Sobic001G419500--Sobic003G006000 Sobic001G419500--Sobic001G457600 Sobic001G419500--Sobic009G063700 Sobic001G419500--Sobic002G258000 Sobic001G419500--Sobic010G194600 Sobic001G419500--Sobic009G075500 Sobic005G166100--Sobic001G216400 Sobic005G166100--Sobic004G056000 Sobic005G166100--Sobic009G063700 Sobic005G166100--Sobic007G128200 Sobic005G166100--Sobic003G381100 Sobic005G166100--Sobic009G075500 Sobic005G166100--Sobic001G419500 Sobic005G166100--Sobic007G193300 Sobic006G097300 Sobic006G097300 Sobic005G166100--Sobic006G097300 Sobic003G381100--Sobic004G056000 Sobic003G381100--Sobic001G216400 Sobic008G072900 Sobic008G072900 Sobic003G381100--Sobic008G072900 Sobic003G027200 Sobic003G027200 Sobic003G381100--Sobic003G027200 Sobic003G381100--Sobic006G097300 Sobic004G254100 Sobic004G254100 Sobic003G381100--Sobic004G254100 Sobic007G043000 Sobic007G043000 Sobic003G381100--Sobic007G043000 Sobic003G381100--Sobic005G166100 Sobic003G381100--Sobic007G193300 Sobic007G128200--Sobic004G234600 Sobic007G128200--Sobic009G063700 Sobic007G128200--Sobic010G194600 Sobic007G128200--Sobic001G216400 Sobic001G158100 Sobic001G158100 Sobic007G128200--Sobic001G158100 Sobic007G128200--Sobic001G457600 Sobic007G128200--Sobic004G056000 Sobic007G128200--Sobic005G166100 Sobic007G128200--Sobic007G043000 Sobic004G234600--Sobic007G128200 Sobic004G234600--Sobic001G216400 Sobic004G234600--Sobic009G063700 Sobic002G053350 Sobic002G053350 Sobic004G234600--Sobic002G053350 Sobic004G234600--Sobic001G457600 Sobic004G234600--Sobic001G419500 Sobic004G234600--Sobic010G194600 Sobic004G234600--Sobic001G158100 Sobic010G183800 Sobic010G183800 Sobic004G234600--Sobic010G183800 Sobic001G457600--Sobic001G137500 Sobic001G457600--Sobic010G194600 Sobic001G457600--Sobic001G419500 Sobic001G457600--Sobic002G258000 Sobic001G457600--Sobic007G128200 Sobic001G457600--Sobic004G234600 Sobic001G457600--Sobic009G063700 Sobic004G281000 Sobic004G281000 Sobic001G457600--Sobic004G281000 Sobic001G457600--Sobic007G193300 Sobic002G121900--Sobic007G043000 Sobic001G287900 Sobic001G287900 Sobic002G121900--Sobic001G287900 Sobic001G137800 Sobic001G137800 Sobic002G121900--Sobic001G137800 Sobic002G121900--Sobic007G128200 Sobic001G235100 Sobic001G235100 Sobic002G121900--Sobic001G235100 Sobic002G121900--Sobic007G193300 Sobic008G138200 Sobic008G138200 Sobic002G121900--Sobic008G138200 Sobic003G374100 Sobic003G374100 Sobic002G121900--Sobic003G374100 Sobic001G171200 Sobic001G171200 Sobic002G121900--Sobic001G171200
Octagon: transcription factors


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