Gene annotation
Transcriptome id Sobic.009G063700.1
Synonym Sb09g005300
Functional annotation zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
UniProt C5Z155
Pfam PF15663
Panther DB PTHR15725 PTHR15725:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G02160 : CCCH-type zinc finger family protein
RAP-DB (Rice) LOC_Os05g08400.1 : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G158100 MBTB43 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
2 Sobic.004G056000 OsMADS29 - MADS-box family gene with MIKCc type-box, expressed -
3 Sobic.001G459400 B3 DNA binding domain containing protein, expressed -
4 Sobic.009G075500 OsMADS58 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
5 Sobic.007G128200 expressed protein -
6 Sobic.010G183800 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
7 Sobic.001G216400 nodulin, putative, expressed K07192: flotillin
8 Sobic.004G234600 expressed protein -
9 Sobic.001G419500 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
10 Sobic.003G300000 expressed protein -
11 Sobic.002G239101 - -
12 Sobic.005G166100 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
13 Sobic.009G211300 MATH domain containing protein, expressed -
14 Sobic.003G092300 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
15 Sobic.001G235200 MYB family transcription factor, putative, expressed -
16 Sobic.001G457600 piwi domain containing protein, expressed -
17 Sobic.006G213900 OsMADS31 - MADS-box family gene with MIKCc type-box, expressed -
18 Sobic.002G078900 agenet domain containing protein, expressed -
19 Sobic.003G020800 - -
20 Sobic.002G178700 ubiquitin fusion protein, putative, expressed -


Gene co-expression network
sample Sobic009G063700 Sobic009G063700 Sobic001G158100 Sobic001G158100 Sobic009G063700--Sobic001G158100 Sobic004G056000 Sobic004G056000 Sobic009G063700--Sobic004G056000 Sobic001G459400 Sobic001G459400 Sobic009G063700--Sobic001G459400 Sobic009G075500 Sobic009G075500 Sobic009G063700--Sobic009G075500 Sobic007G128200 Sobic007G128200 Sobic009G063700--Sobic007G128200 Sobic010G183800 Sobic010G183800 Sobic009G063700--Sobic010G183800 Sobic001G216400 Sobic001G216400 Sobic009G063700--Sobic001G216400 Sobic004G234600 Sobic004G234600 Sobic009G063700--Sobic004G234600 Sobic001G419500 Sobic001G419500 Sobic009G063700--Sobic001G419500 Sobic001G158100--Sobic009G063700 Sobic009G211300 Sobic009G211300 Sobic001G158100--Sobic009G211300 Sobic001G158100--Sobic001G459400 Sobic001G158100--Sobic004G056000 Sobic003G092300 Sobic003G092300 Sobic001G158100--Sobic003G092300 Sobic001G158100--Sobic010G183800 Sobic001G158100--Sobic009G075500 Sobic001G158100--Sobic007G128200 Sobic001G158100--Sobic001G216400 Sobic003G381100 Sobic003G381100 Sobic004G056000--Sobic003G381100 Sobic004G056000--Sobic009G063700 Sobic003G020800 Sobic003G020800 Sobic004G056000--Sobic003G020800 Sobic004G056000--Sobic001G158100 Sobic005G166100 Sobic005G166100 Sobic004G056000--Sobic005G166100 Sobic004G056000--Sobic001G216400 Sobic004G056000--Sobic009G075500 Sobic004G056000--Sobic007G128200 Sobic002G239101 Sobic002G239101 Sobic004G056000--Sobic002G239101 Sobic001G459400--Sobic003G092300 Sobic001G459300 Sobic001G459300 Sobic001G459400--Sobic001G459300 Sobic005G070700 Sobic005G070700 Sobic001G459400--Sobic005G070700 Sobic001G459400--Sobic010G183800 Sobic010G048600 Sobic010G048600 Sobic001G459400--Sobic010G048600 Sobic001G459400--Sobic009G075500 Sobic002G078900 Sobic002G078900 Sobic001G459400--Sobic002G078900 Sobic001G459400--Sobic009G063700 Sobic006G015100 Sobic006G015100 Sobic001G459400--Sobic006G015100 Sobic009G075500--Sobic001G459400 Sobic009G075500--Sobic001G216400 Sobic009G075500--Sobic009G063700 Sobic009G075500--Sobic003G092300 Sobic009G075500--Sobic002G239101 Sobic006G213900 Sobic006G213900 Sobic009G075500--Sobic006G213900 Sobic009G075500--Sobic001G158100 Sobic003G300000 Sobic003G300000 Sobic009G075500--Sobic003G300000 Sobic009G075500--Sobic004G056000 Sobic007G128200--Sobic004G234600 Sobic007G128200--Sobic009G063700 Sobic010G194600 Sobic010G194600 Sobic007G128200--Sobic010G194600 Sobic007G128200--Sobic001G216400 Sobic007G128200--Sobic001G158100 Sobic001G457600 Sobic001G457600 Sobic007G128200--Sobic001G457600 Sobic007G128200--Sobic004G056000 Sobic007G128200--Sobic005G166100 Sobic007G043000 Sobic007G043000 Sobic007G128200--Sobic007G043000 Sobic010G183800--Sobic003G092300 Sobic010G183800--Sobic001G459400 Sobic010G183800--Sobic002G078900 Sobic010G183800--Sobic003G300000 Sobic001G456000 Sobic001G456000 Sobic010G183800--Sobic001G456000 Sobic010G183800--Sobic009G063700 Sobic001G071600 Sobic001G071600 Sobic010G183800--Sobic001G071600 Sobic010G183800--Sobic001G158100 Sobic001G106500 Sobic001G106500 Sobic010G183800--Sobic001G106500 Sobic001G216400--Sobic009G075500 Sobic001G216400--Sobic004G234600 Sobic001G216400--Sobic009G063700 Sobic001G216400--Sobic005G166100 Sobic001G216400--Sobic001G419500 Sobic001G216400--Sobic003G381100 Sobic001G216400--Sobic006G213900 Sobic007G193300 Sobic007G193300 Sobic001G216400--Sobic007G193300 Sobic001G216400--Sobic004G056000 Sobic004G234600--Sobic007G128200 Sobic004G234600--Sobic001G216400 Sobic004G234600--Sobic009G063700 Sobic002G053350 Sobic002G053350 Sobic004G234600--Sobic002G053350 Sobic004G234600--Sobic001G457600 Sobic004G234600--Sobic001G419500 Sobic004G234600--Sobic010G194600 Sobic004G234600--Sobic001G158100 Sobic004G234600--Sobic010G183800 Sobic002G178700 Sobic002G178700 Sobic001G419500--Sobic002G178700 Sobic001G137500 Sobic001G137500 Sobic001G419500--Sobic001G137500 Sobic001G419500--Sobic001G216400 Sobic003G006000 Sobic003G006000 Sobic001G419500--Sobic003G006000 Sobic001G419500--Sobic001G457600 Sobic001G419500--Sobic009G063700 Sobic002G258000 Sobic002G258000 Sobic001G419500--Sobic002G258000 Sobic001G419500--Sobic010G194600 Sobic001G419500--Sobic009G075500
Octagon: transcription factors


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