Gene annotation
Transcriptome id Sobic.002G178700.2
Synonym
Functional annotation ubiquitin fusion protein, putative, expressed
UniProt A0A1W0W4N6
Pfam PF00240 PF01020
Panther DB PTHR10666
NCBI CDD KOG0003; Ubiquitin/60s ribosomal protein L40 fusion
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0006412translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT2G36170 : Ubiquitin supergroup;Ribosomal protein L40e
RAP-DB (Rice) LOC_Os09g27930.1 : ubiquitin fusion protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ91591 , KQJ97255 , KQK17095
Barley HORVU4Hr1G001170.5 , HORVU4Hr1G001170.4 , HORVU4Hr1G001170.1 , HORVU4Hr1G001170.3 , HORVU4Hr1G001170.2 , HORVU1Hr1G043930.6 , HORVU1Hr1G043930.7 , HORVU1Hr1G043930.4 , HORVU1Hr1G043930.5 , HORVU1Hr1G043930.2 , HORVU1Hr1G043930.3 , HORVU1Hr1G043930.1 , HORVU1Hr1G043930.8 , HORVU1Hr1G043930.9 , HORVU1Hr1G043930.10 , HORVU1Hr1G043930.11 , HORVU7Hr1G029070.1 , HORVU3Hr1G014150.2 , HORVU3Hr1G014150.3 , HORVU3Hr1G014150.1 , HORVU3Hr1G014150.5 , HORVU7Hr1G029100.1 , HORVU7Hr1G029150.2 , HORVU7Hr1G029150.1 , HORVU3Hr1G014180.5 , HORVU3Hr1G014180.1 , HORVU3Hr1G014180.3 , HORVU3Hr1G014180.2 , HORVU7Hr1G109650.2
Wheat TraesCS7D02G474200 , TraesCS4B02G008400 , TraesCS4A02G306500 , TraesCS7A02G487500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G419500 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
2 Sobic.003G006000 expressed protein -
3 Sobic.001G137500 ankyrin, putative, expressed -
4 Sobic.003G088600 transcription factor X1, putative, expressed -
5 Sobic.009G063700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
6 Sobic.002G078900 agenet domain containing protein, expressed -
7 Sobic.001G459400 B3 DNA binding domain containing protein, expressed -
8 Sobic.008G137700 XH domain containing protein, expressed -
9 Sobic.003G300000 expressed protein -
10 Sobic.006G213900 OsMADS31 - MADS-box family gene with MIKCc type-box, expressed -
11 Sobic.005G166100 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
12 Sobic.001G457600 piwi domain containing protein, expressed -
13 Sobic.002G258000 homologous to AGL2 and AGL4: expression analysis and mapping data suggest that it is the ortholog of OsMADS24.(PubMedID : 9065695)@OsMADS8 - MADS-box family gene with MIKCc type-box, expressed -
14 Sobic.001G216400 nodulin, putative, expressed K07192: flotillin
15 Sobic.006G271600 RNA recognition motif containing protein, putative, expressed K13126: polyadenylate-binding protein
16 Sobic.010G194600 CW-type Zinc Finger, putative, expressed -
17 Sobic.009G075500 OsMADS58 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
18 Sobic.003G117200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
19 Sobic.003G092300 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
20 Sobic.002G239101 - -


Gene co-expression network
sample Sobic002G178700 Sobic002G178700 Sobic001G419500 Sobic001G419500 Sobic002G178700--Sobic001G419500 Sobic003G006000 Sobic003G006000 Sobic002G178700--Sobic003G006000 Sobic001G137500 Sobic001G137500 Sobic002G178700--Sobic001G137500 Sobic003G088600 Sobic003G088600 Sobic002G178700--Sobic003G088600 Sobic009G063700 Sobic009G063700 Sobic002G178700--Sobic009G063700 Sobic002G078900 Sobic002G078900 Sobic002G178700--Sobic002G078900 Sobic001G459400 Sobic001G459400 Sobic002G178700--Sobic001G459400 Sobic008G137700 Sobic008G137700 Sobic002G178700--Sobic008G137700 Sobic003G300000 Sobic003G300000 Sobic002G178700--Sobic003G300000 Sobic001G419500--Sobic002G178700 Sobic001G419500--Sobic001G137500 Sobic001G216400 Sobic001G216400 Sobic001G419500--Sobic001G216400 Sobic001G419500--Sobic003G006000 Sobic001G457600 Sobic001G457600 Sobic001G419500--Sobic001G457600 Sobic001G419500--Sobic009G063700 Sobic002G258000 Sobic002G258000 Sobic001G419500--Sobic002G258000 Sobic010G194600 Sobic010G194600 Sobic001G419500--Sobic010G194600 Sobic009G075500 Sobic009G075500 Sobic001G419500--Sobic009G075500 Sobic003G006000--Sobic002G178700 Sobic003G006000--Sobic001G137500 Sobic003G006000--Sobic001G419500 Sobic006G271600 Sobic006G271600 Sobic003G006000--Sobic006G271600 Sobic003G006000--Sobic002G078900 Sobic003G006000--Sobic003G088600 Sobic009G243000 Sobic009G243000 Sobic003G006000--Sobic009G243000 Sobic003G006000--Sobic002G258000 Sobic003G006000--Sobic001G457600 Sobic001G137500--Sobic001G419500 Sobic001G137500--Sobic002G258000 Sobic001G137500--Sobic001G457600 Sobic001G137500--Sobic002G178700 Sobic001G137500--Sobic003G006000 Sobic007G193300 Sobic007G193300 Sobic001G137500--Sobic007G193300 Sobic001G137400 Sobic001G137400 Sobic001G137500--Sobic001G137400 Sobic001G137500--Sobic010G194600 Sobic001G137500--Sobic003G088600 Sobic003G088600--Sobic008G137700 Sobic003G088600--Sobic001G137500 Sobic002G053350 Sobic002G053350 Sobic003G088600--Sobic002G053350 Sobic003G088600--Sobic001G419500 Sobic003G088600--Sobic010G194600 Sobic003G088600--Sobic006G271600 Sobic003G088600--Sobic003G006000 Sobic009G219500 Sobic009G219500 Sobic003G088600--Sobic009G219500 Sobic003G088600--Sobic002G178700 Sobic001G158100 Sobic001G158100 Sobic009G063700--Sobic001G158100 Sobic004G056000 Sobic004G056000 Sobic009G063700--Sobic004G056000 Sobic009G063700--Sobic001G459400 Sobic009G063700--Sobic009G075500 Sobic007G128200 Sobic007G128200 Sobic009G063700--Sobic007G128200 Sobic010G183800 Sobic010G183800 Sobic009G063700--Sobic010G183800 Sobic009G063700--Sobic001G216400 Sobic004G234600 Sobic004G234600 Sobic009G063700--Sobic004G234600 Sobic009G063700--Sobic001G419500 Sobic001G456000 Sobic001G456000 Sobic002G078900--Sobic001G456000 Sobic002G078900--Sobic010G183800 Sobic002G078900--Sobic001G459400 Sobic002G078900--Sobic003G300000 Sobic001G106500 Sobic001G106500 Sobic002G078900--Sobic001G106500 Sobic001G071600 Sobic001G071600 Sobic002G078900--Sobic001G071600 Sobic001G459300 Sobic001G459300 Sobic002G078900--Sobic001G459300 Sobic003G092300 Sobic003G092300 Sobic002G078900--Sobic003G092300 Sobic002G078900--Sobic009G243000 Sobic001G459400--Sobic003G092300 Sobic001G459400--Sobic001G459300 Sobic005G070700 Sobic005G070700 Sobic001G459400--Sobic005G070700 Sobic001G459400--Sobic010G183800 Sobic010G048600 Sobic010G048600 Sobic001G459400--Sobic010G048600 Sobic001G459400--Sobic009G075500 Sobic001G459400--Sobic002G078900 Sobic001G459400--Sobic009G063700 Sobic006G015100 Sobic006G015100 Sobic001G459400--Sobic006G015100 Sobic008G137700--Sobic003G088600 Sobic008G137700--Sobic002G053350 Sobic008G137700--Sobic001G419500 Sobic008G137700--Sobic002G178700 Sobic008G137700--Sobic001G137500 Sobic008G137700--Sobic003G300000 Sobic008G137700--Sobic004G234600 Sobic008G137700--Sobic010G194600 Sobic008G137700--Sobic003G006000 Sobic003G300000--Sobic010G183800 Sobic003G300000--Sobic001G459400 Sobic003G300000--Sobic003G092300 Sobic003G300000--Sobic002G078900 Sobic003G300000--Sobic009G063700 Sobic003G300000--Sobic009G075500 Sobic003G300000--Sobic006G271600 Sobic004G281000 Sobic004G281000 Sobic003G300000--Sobic004G281000 Sobic003G300000--Sobic001G419500
Octagon: transcription factors


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