Gene annotation
Transcriptome id Sobic.003G088600.1,Sobic.003G088600.2,Sobic.003G088600.5,Sobic.003G088600.4,Sobic.003G088600.6,Sobic.003G088600.3,Sobic.003G088600.7
Synonym
Functional annotation transcription factor X1, putative, expressed
UniProt A0A1W0VWD8 , A0A1B6Q243 , A0A1W0VWE6 , A0A1W0VWB7
Pfam PF03468 PF03469 PF03469 PF03468
Panther DB PTHR21596 PTHR21596:SF26
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G80790 : XH/XS domain-containing protein
RAP-DB (Rice) LOC_Os01g03570.1 : transcription factor X1, putative, expressed
MaizeGDB (Corn) Zm00025a023657
Brachypodium KQK08877 , PNT72446
Barley HORVU3Hr1G054120.2 , HORVU3Hr1G054120.1 , HORVU3Hr1G054120.7 , HORVU3Hr1G054120.6 , HORVU3Hr1G054120.5 , HORVU7Hr1G115180.11 , HORVU7Hr1G115180.10 , HORVU7Hr1G115180.13 , HORVU7Hr1G115180.12 , HORVU7Hr1G115180.14 , HORVU7Hr1G115180.5 , HORVU7Hr1G115180.4 , HORVU7Hr1G115180.7 , HORVU7Hr1G115180.6 , HORVU7Hr1G115180.1 , HORVU7Hr1G115180.3 , HORVU7Hr1G115180.2 , HORVU7Hr1G115180.9
Wheat TraesCS3A02G221000 , TraesCS3B02G251200 , TraesCS3D02G231600 , TraesCS6A02G313000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G088600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G137700 XH domain containing protein, expressed -
2 Sobic.001G137500 ankyrin, putative, expressed -
3 Sobic.002G053350 - -
4 Sobic.001G419500 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
5 Sobic.010G194600 CW-type Zinc Finger, putative, expressed -
6 Sobic.006G271600 RNA recognition motif containing protein, putative, expressed K13126: polyadenylate-binding protein
7 Sobic.003G006000 expressed protein -
8 Sobic.009G219500 dehydrogenase/reductase SDR family member 2, putative, expressed K11147: dehydrogenase/reductase SDR family member 4
9 Sobic.002G178700 ubiquitin fusion protein, putative, expressed -
10 Sobic.006G112300 RNA recognition motif family protein, expressed -
11 Sobic.002G258000 homologous to AGL2 and AGL4: expression analysis and mapping data suggest that it is the ortholog of OsMADS24.(PubMedID : 9065695)@OsMADS8 - MADS-box family gene with MIKCc type-box, expressed -
12 Sobic.004G234600 expressed protein -
13 Sobic.001G137800 ankyrin, putative, expressed -
14 Sobic.007G128200 expressed protein -
15 Sobic.003G117200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
16 Sobic.001G457600 piwi domain containing protein, expressed -
17 Sobic.003G300000 expressed protein -
18 Sobic.001G137400 ankyrin, putative, expressed -
19 Sobic.003G374100 beta-galactosidase precursor, putative, expressed -
20 Sobic.003G129200 argonaute, putative, expressed -


Gene co-expression network
sample Sobic003G088600 Sobic003G088600 Sobic008G137700 Sobic008G137700 Sobic003G088600--Sobic008G137700 Sobic001G137500 Sobic001G137500 Sobic003G088600--Sobic001G137500 Sobic002G053350 Sobic002G053350 Sobic003G088600--Sobic002G053350 Sobic001G419500 Sobic001G419500 Sobic003G088600--Sobic001G419500 Sobic010G194600 Sobic010G194600 Sobic003G088600--Sobic010G194600 Sobic006G271600 Sobic006G271600 Sobic003G088600--Sobic006G271600 Sobic003G006000 Sobic003G006000 Sobic003G088600--Sobic003G006000 Sobic009G219500 Sobic009G219500 Sobic003G088600--Sobic009G219500 Sobic002G178700 Sobic002G178700 Sobic003G088600--Sobic002G178700 Sobic008G137700--Sobic003G088600 Sobic008G137700--Sobic002G053350 Sobic008G137700--Sobic001G419500 Sobic008G137700--Sobic002G178700 Sobic008G137700--Sobic001G137500 Sobic003G300000 Sobic003G300000 Sobic008G137700--Sobic003G300000 Sobic004G234600 Sobic004G234600 Sobic008G137700--Sobic004G234600 Sobic008G137700--Sobic010G194600 Sobic008G137700--Sobic003G006000 Sobic001G137500--Sobic001G419500 Sobic002G258000 Sobic002G258000 Sobic001G137500--Sobic002G258000 Sobic001G457600 Sobic001G457600 Sobic001G137500--Sobic001G457600 Sobic001G137500--Sobic002G178700 Sobic001G137500--Sobic003G006000 Sobic007G193300 Sobic007G193300 Sobic001G137500--Sobic007G193300 Sobic001G137400 Sobic001G137400 Sobic001G137500--Sobic001G137400 Sobic001G137500--Sobic010G194600 Sobic001G137500--Sobic003G088600 Sobic002G053350--Sobic004G234600 Sobic002G053350--Sobic003G088600 Sobic002G053350--Sobic008G137700 Sobic007G128200 Sobic007G128200 Sobic002G053350--Sobic007G128200 Sobic001G216400 Sobic001G216400 Sobic002G053350--Sobic001G216400 Sobic002G053350--Sobic001G419500 Sobic002G053350--Sobic010G194600 Sobic002G053350--Sobic007G193300 Sobic002G053350--Sobic001G137500 Sobic001G419500--Sobic002G178700 Sobic001G419500--Sobic001G137500 Sobic001G419500--Sobic001G216400 Sobic001G419500--Sobic003G006000 Sobic001G419500--Sobic001G457600 Sobic009G063700 Sobic009G063700 Sobic001G419500--Sobic009G063700 Sobic001G419500--Sobic002G258000 Sobic001G419500--Sobic010G194600 Sobic009G075500 Sobic009G075500 Sobic001G419500--Sobic009G075500 Sobic010G194600--Sobic001G457600 Sobic010G194600--Sobic006G271600 Sobic010G194600--Sobic007G128200 Sobic010G194600--Sobic001G137500 Sobic010G194600--Sobic001G419500 Sobic010G194600--Sobic003G088600 Sobic010G194600--Sobic004G234600 Sobic010G194600--Sobic009G063700 Sobic010G194600--Sobic003G300000 Sobic001G071600 Sobic001G071600 Sobic006G271600--Sobic001G071600 Sobic006G271600--Sobic010G194600 Sobic003G117200 Sobic003G117200 Sobic006G271600--Sobic003G117200 Sobic009G243000 Sobic009G243000 Sobic006G271600--Sobic009G243000 Sobic006G271600--Sobic003G300000 Sobic002G078900 Sobic002G078900 Sobic006G271600--Sobic002G078900 Sobic003G046400 Sobic003G046400 Sobic006G271600--Sobic003G046400 Sobic010G183800 Sobic010G183800 Sobic006G271600--Sobic010G183800 Sobic006G271600--Sobic003G088600 Sobic003G006000--Sobic002G178700 Sobic003G006000--Sobic001G137500 Sobic003G006000--Sobic001G419500 Sobic003G006000--Sobic006G271600 Sobic003G006000--Sobic002G078900 Sobic003G006000--Sobic003G088600 Sobic003G006000--Sobic009G243000 Sobic003G006000--Sobic002G258000 Sobic003G006000--Sobic001G457600 Sobic009G219500--Sobic003G088600 Sobic009G219500--Sobic006G271600 Sobic004G101200 Sobic004G101200 Sobic009G219500--Sobic004G101200 Sobic009G219500--Sobic010G194600 Sobic001G137800 Sobic001G137800 Sobic009G219500--Sobic001G137800 Sobic003G129200 Sobic003G129200 Sobic009G219500--Sobic003G129200 Sobic001G086400 Sobic001G086400 Sobic009G219500--Sobic001G086400 Sobic009G219500--Sobic008G137700 Sobic009G219500--Sobic003G117200 Sobic002G178700--Sobic001G419500 Sobic002G178700--Sobic003G006000 Sobic002G178700--Sobic001G137500 Sobic002G178700--Sobic003G088600 Sobic002G178700--Sobic009G063700 Sobic002G178700--Sobic002G078900 Sobic001G459400 Sobic001G459400 Sobic002G178700--Sobic001G459400 Sobic002G178700--Sobic008G137700 Sobic002G178700--Sobic003G300000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.