Gene annotation
Transcriptome id Sobic.010G194600.4,Sobic.010G194600.5,Sobic.010G194600.3
Synonym Sb10g024390
Functional annotation CW-type Zinc Finger, putative, expressed
UniProt A0A194YK73
Pfam PF07496 PF13589
Panther DB PTHR23336 PTHR23336:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT1G19100 : Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
RAP-DB (Rice) LOC_Os06g41710.1 : CW-type Zinc Finger, putative, expressed
MaizeGDB (Corn) Zm00025a051521
Brachypodium KQK17640
Barley HORVU7Hr1G093640.17 , HORVU7Hr1G093640.16 , HORVU7Hr1G093640.15 , HORVU7Hr1G093640.14 , HORVU7Hr1G093640.13 , HORVU7Hr1G093640.12 , HORVU7Hr1G093640.11 , HORVU7Hr1G093640.10 , HORVU7Hr1G093640.18 , HORVU7Hr1G093640.9 , HORVU7Hr1G093640.8 , HORVU7Hr1G093640.7 , HORVU7Hr1G093640.5 , HORVU7Hr1G093640.4 , HORVU7Hr1G093640.3 , HORVU7Hr1G093640.2 , HORVU7Hr1G093640.1
Wheat TraesCS7B02G299600 , TraesCS7A02G399000 , TraesCS7D02G393200 , TraesCS7D02G393200 , TraesCS7B02G299600
Populus -


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cDNA sequences
Sobic.010G194600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G457600 piwi domain containing protein, expressed -
2 Sobic.006G271600 RNA recognition motif containing protein, putative, expressed K13126: polyadenylate-binding protein
3 Sobic.007G128200 expressed protein -
4 Sobic.001G137500 ankyrin, putative, expressed -
5 Sobic.001G419500 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
6 Sobic.003G088600 transcription factor X1, putative, expressed -
7 Sobic.004G234600 expressed protein -
8 Sobic.009G063700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
9 Sobic.003G300000 expressed protein -
10 Sobic.002G053350 - -
11 Sobic.001G071600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
12 Sobic.006G112300 RNA recognition motif family protein, expressed -
13 Sobic.001G137400 ankyrin, putative, expressed -
14 Sobic.003G006000 expressed protein -
15 Sobic.009G243000 OsFBL2 - F-box domain and LRR containing protein, expressed -
16 Sobic.002G258000 homologous to AGL2 and AGL4: expression analysis and mapping data suggest that it is the ortholog of OsMADS24.(PubMedID : 9065695)@OsMADS8 - MADS-box family gene with MIKCc type-box, expressed -
17 Sobic.003G207000 expressed protein -
18 Sobic.002G178700 ubiquitin fusion protein, putative, expressed -
19 Sobic.005G166100 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
20 Sobic.008G137700 XH domain containing protein, expressed -


Gene co-expression network
sample Sobic010G194600 Sobic010G194600 Sobic001G457600 Sobic001G457600 Sobic010G194600--Sobic001G457600 Sobic006G271600 Sobic006G271600 Sobic010G194600--Sobic006G271600 Sobic007G128200 Sobic007G128200 Sobic010G194600--Sobic007G128200 Sobic001G137500 Sobic001G137500 Sobic010G194600--Sobic001G137500 Sobic001G419500 Sobic001G419500 Sobic010G194600--Sobic001G419500 Sobic003G088600 Sobic003G088600 Sobic010G194600--Sobic003G088600 Sobic004G234600 Sobic004G234600 Sobic010G194600--Sobic004G234600 Sobic009G063700 Sobic009G063700 Sobic010G194600--Sobic009G063700 Sobic003G300000 Sobic003G300000 Sobic010G194600--Sobic003G300000 Sobic001G457600--Sobic001G137500 Sobic001G457600--Sobic010G194600 Sobic001G457600--Sobic001G419500 Sobic002G258000 Sobic002G258000 Sobic001G457600--Sobic002G258000 Sobic001G457600--Sobic007G128200 Sobic001G457600--Sobic004G234600 Sobic001G457600--Sobic009G063700 Sobic004G281000 Sobic004G281000 Sobic001G457600--Sobic004G281000 Sobic007G193300 Sobic007G193300 Sobic001G457600--Sobic007G193300 Sobic001G071600 Sobic001G071600 Sobic006G271600--Sobic001G071600 Sobic006G271600--Sobic010G194600 Sobic003G117200 Sobic003G117200 Sobic006G271600--Sobic003G117200 Sobic009G243000 Sobic009G243000 Sobic006G271600--Sobic009G243000 Sobic006G271600--Sobic003G300000 Sobic002G078900 Sobic002G078900 Sobic006G271600--Sobic002G078900 Sobic003G046400 Sobic003G046400 Sobic006G271600--Sobic003G046400 Sobic010G183800 Sobic010G183800 Sobic006G271600--Sobic010G183800 Sobic006G271600--Sobic003G088600 Sobic007G128200--Sobic004G234600 Sobic007G128200--Sobic009G063700 Sobic007G128200--Sobic010G194600 Sobic001G216400 Sobic001G216400 Sobic007G128200--Sobic001G216400 Sobic001G158100 Sobic001G158100 Sobic007G128200--Sobic001G158100 Sobic007G128200--Sobic001G457600 Sobic004G056000 Sobic004G056000 Sobic007G128200--Sobic004G056000 Sobic005G166100 Sobic005G166100 Sobic007G128200--Sobic005G166100 Sobic007G043000 Sobic007G043000 Sobic007G128200--Sobic007G043000 Sobic001G137500--Sobic001G419500 Sobic001G137500--Sobic002G258000 Sobic001G137500--Sobic001G457600 Sobic002G178700 Sobic002G178700 Sobic001G137500--Sobic002G178700 Sobic003G006000 Sobic003G006000 Sobic001G137500--Sobic003G006000 Sobic001G137500--Sobic007G193300 Sobic001G137400 Sobic001G137400 Sobic001G137500--Sobic001G137400 Sobic001G137500--Sobic010G194600 Sobic001G137500--Sobic003G088600 Sobic001G419500--Sobic002G178700 Sobic001G419500--Sobic001G137500 Sobic001G419500--Sobic001G216400 Sobic001G419500--Sobic003G006000 Sobic001G419500--Sobic001G457600 Sobic001G419500--Sobic009G063700 Sobic001G419500--Sobic002G258000 Sobic001G419500--Sobic010G194600 Sobic009G075500 Sobic009G075500 Sobic001G419500--Sobic009G075500 Sobic008G137700 Sobic008G137700 Sobic003G088600--Sobic008G137700 Sobic003G088600--Sobic001G137500 Sobic002G053350 Sobic002G053350 Sobic003G088600--Sobic002G053350 Sobic003G088600--Sobic001G419500 Sobic003G088600--Sobic010G194600 Sobic003G088600--Sobic006G271600 Sobic003G088600--Sobic003G006000 Sobic009G219500 Sobic009G219500 Sobic003G088600--Sobic009G219500 Sobic003G088600--Sobic002G178700 Sobic004G234600--Sobic007G128200 Sobic004G234600--Sobic001G216400 Sobic004G234600--Sobic009G063700 Sobic004G234600--Sobic002G053350 Sobic004G234600--Sobic001G457600 Sobic004G234600--Sobic001G419500 Sobic004G234600--Sobic010G194600 Sobic004G234600--Sobic001G158100 Sobic004G234600--Sobic010G183800 Sobic009G063700--Sobic001G158100 Sobic009G063700--Sobic004G056000 Sobic001G459400 Sobic001G459400 Sobic009G063700--Sobic001G459400 Sobic009G063700--Sobic009G075500 Sobic009G063700--Sobic007G128200 Sobic009G063700--Sobic010G183800 Sobic009G063700--Sobic001G216400 Sobic009G063700--Sobic004G234600 Sobic009G063700--Sobic001G419500 Sobic003G300000--Sobic010G183800 Sobic003G300000--Sobic001G459400 Sobic003G092300 Sobic003G092300 Sobic003G300000--Sobic003G092300 Sobic003G300000--Sobic002G078900 Sobic003G300000--Sobic009G063700 Sobic003G300000--Sobic009G075500 Sobic003G300000--Sobic006G271600 Sobic003G300000--Sobic004G281000 Sobic003G300000--Sobic001G419500
Octagon: transcription factors


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