Gene annotation
Transcriptome id Sobic.003G207000.1
Synonym Sb03g026860
Functional annotation expressed protein
UniProt C5XQ58
Pfam -
Panther DB PTHR33913 PTHR33913:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G05950 : -
RAP-DB (Rice) LOC_Os09g33940.1 : expressed protein
MaizeGDB (Corn) Zm00025a047651
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G207000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G191600 expressed protein -
2 Sobic.005G166100 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
3 Sobic.009G063700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
4 Sobic.001G086400 OsMADS34 - MADS-box family gene with MIKCc type-box, expressed -
5 Sobic.010G194600 CW-type Zinc Finger, putative, expressed -
6 Sobic.001G459400 B3 DNA binding domain containing protein, expressed -
7 Sobic.001G158100 MBTB43 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
8 Sobic.003G300000 expressed protein -
9 Sobic.009G075500 OsMADS58 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
10 Sobic.010G183800 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
11 Sobic.007G128200 expressed protein -
12 Sobic.003G092300 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
13 Sobic.001G137800 ankyrin, putative, expressed -
14 Sobic.001G216400 nodulin, putative, expressed K07192: flotillin
15 Sobic.001G463301 - -
16 Sobic.002G239101 - -
17 Sobic.001G419500 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
18 Sobic.001G137600 ankyrin, putative, expressed -
19 Sobic.006G271600 RNA recognition motif containing protein, putative, expressed K13126: polyadenylate-binding protein
20 Sobic.006G015100 expressed protein -


Gene co-expression network
sample Sobic003G207000 Sobic003G207000 Sobic003G191600 Sobic003G191600 Sobic003G207000--Sobic003G191600 Sobic005G166100 Sobic005G166100 Sobic003G207000--Sobic005G166100 Sobic009G063700 Sobic009G063700 Sobic003G207000--Sobic009G063700 Sobic001G086400 Sobic001G086400 Sobic003G207000--Sobic001G086400 Sobic010G194600 Sobic010G194600 Sobic003G207000--Sobic010G194600 Sobic001G459400 Sobic001G459400 Sobic003G207000--Sobic001G459400 Sobic001G158100 Sobic001G158100 Sobic003G207000--Sobic001G158100 Sobic003G300000 Sobic003G300000 Sobic003G207000--Sobic003G300000 Sobic009G075500 Sobic009G075500 Sobic003G207000--Sobic009G075500 Sobic003G191600--Sobic003G207000 Sobic010G183800 Sobic010G183800 Sobic003G191600--Sobic010G183800 Sobic003G092300 Sobic003G092300 Sobic003G191600--Sobic003G092300 Sobic003G191600--Sobic005G166100 Sobic001G463301 Sobic001G463301 Sobic003G191600--Sobic001G463301 Sobic003G191600--Sobic001G459400 Sobic003G191600--Sobic001G158100 Sobic003G191600--Sobic003G300000 Sobic007G033700 Sobic007G033700 Sobic003G191600--Sobic007G033700 Sobic001G216400 Sobic001G216400 Sobic005G166100--Sobic001G216400 Sobic004G056000 Sobic004G056000 Sobic005G166100--Sobic004G056000 Sobic005G166100--Sobic009G063700 Sobic007G128200 Sobic007G128200 Sobic005G166100--Sobic007G128200 Sobic003G381100 Sobic003G381100 Sobic005G166100--Sobic003G381100 Sobic005G166100--Sobic009G075500 Sobic001G419500 Sobic001G419500 Sobic005G166100--Sobic001G419500 Sobic007G193300 Sobic007G193300 Sobic005G166100--Sobic007G193300 Sobic006G097300 Sobic006G097300 Sobic005G166100--Sobic006G097300 Sobic009G063700--Sobic001G158100 Sobic009G063700--Sobic004G056000 Sobic009G063700--Sobic001G459400 Sobic009G063700--Sobic009G075500 Sobic009G063700--Sobic007G128200 Sobic009G063700--Sobic010G183800 Sobic009G063700--Sobic001G216400 Sobic004G234600 Sobic004G234600 Sobic009G063700--Sobic004G234600 Sobic009G063700--Sobic001G419500 Sobic002G263000 Sobic002G263000 Sobic001G086400--Sobic002G263000 Sobic001G086400--Sobic003G207000 Sobic001G137800 Sobic001G137800 Sobic001G086400--Sobic001G137800 Sobic001G086400--Sobic010G194600 Sobic001G137400 Sobic001G137400 Sobic001G086400--Sobic001G137400 Sobic002G121900 Sobic002G121900 Sobic001G086400--Sobic002G121900 Sobic002G053350 Sobic002G053350 Sobic001G086400--Sobic002G053350 Sobic001G086400--Sobic007G128200 Sobic001G171200 Sobic001G171200 Sobic001G086400--Sobic001G171200 Sobic001G457600 Sobic001G457600 Sobic010G194600--Sobic001G457600 Sobic006G271600 Sobic006G271600 Sobic010G194600--Sobic006G271600 Sobic010G194600--Sobic007G128200 Sobic001G137500 Sobic001G137500 Sobic010G194600--Sobic001G137500 Sobic010G194600--Sobic001G419500 Sobic003G088600 Sobic003G088600 Sobic010G194600--Sobic003G088600 Sobic010G194600--Sobic004G234600 Sobic010G194600--Sobic009G063700 Sobic010G194600--Sobic003G300000 Sobic001G459400--Sobic003G092300 Sobic001G459300 Sobic001G459300 Sobic001G459400--Sobic001G459300 Sobic005G070700 Sobic005G070700 Sobic001G459400--Sobic005G070700 Sobic001G459400--Sobic010G183800 Sobic010G048600 Sobic010G048600 Sobic001G459400--Sobic010G048600 Sobic001G459400--Sobic009G075500 Sobic002G078900 Sobic002G078900 Sobic001G459400--Sobic002G078900 Sobic001G459400--Sobic009G063700 Sobic006G015100 Sobic006G015100 Sobic001G459400--Sobic006G015100 Sobic001G158100--Sobic009G063700 Sobic009G211300 Sobic009G211300 Sobic001G158100--Sobic009G211300 Sobic001G158100--Sobic001G459400 Sobic001G158100--Sobic004G056000 Sobic001G158100--Sobic003G092300 Sobic001G158100--Sobic010G183800 Sobic001G158100--Sobic009G075500 Sobic001G158100--Sobic007G128200 Sobic001G158100--Sobic001G216400 Sobic003G300000--Sobic010G183800 Sobic003G300000--Sobic001G459400 Sobic003G300000--Sobic003G092300 Sobic003G300000--Sobic002G078900 Sobic003G300000--Sobic009G063700 Sobic003G300000--Sobic009G075500 Sobic003G300000--Sobic006G271600 Sobic004G281000 Sobic004G281000 Sobic003G300000--Sobic004G281000 Sobic003G300000--Sobic001G419500 Sobic009G075500--Sobic001G459400 Sobic009G075500--Sobic001G216400 Sobic009G075500--Sobic009G063700 Sobic009G075500--Sobic003G092300 Sobic002G239101 Sobic002G239101 Sobic009G075500--Sobic002G239101 Sobic006G213900 Sobic006G213900 Sobic009G075500--Sobic006G213900 Sobic009G075500--Sobic001G158100 Sobic009G075500--Sobic003G300000 Sobic009G075500--Sobic004G056000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.