Gene annotation
Transcriptome id Sobic.001G137600.3,Sobic.001G137600.1
Synonym Sb01g012020
Functional annotation ankyrin, putative, expressed
UniProt A0A1B6QIV7 , C5WPN4
Pfam PF07719 PF13414 PF12796
Panther DB PTHR22904 PTHR22904:SF326
NCBI CDD KOG4412; 26S proteasome regulatory complex, subunit PSMD10
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G04710 : ankyrin repeat family protein
RAP-DB (Rice) LOC_Os03g47686.1,LOC_Os03g47650.1 : ankyrin, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK13793
Barley -
Wheat TraesCS7D02G385000 , TraesCS4D02G022400
Populus -


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cDNA sequences
Sobic.001G137600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G033700 OsFBX309 - F-box domain containing protein, expressed -
2 Sobic.006G271600 RNA recognition motif containing protein, putative, expressed K13126: polyadenylate-binding protein
3 Sobic.009G243000 OsFBL2 - F-box domain and LRR containing protein, expressed -
4 Sobic.003G046400 transcriptional corepressor LEUNIG, putative, expressed -
5 Sobic.001G455900 "qGL3-2/qLGY3(Ortholog in rice:Yu et al., 2018/Liu et al., 2018)"(PubMedID : 31659846)@determinacy of the spikelet meristem and determining the identity of lemmas and paleas(PubMedID : 15208396)@OsMADS1 - MADS-box family gene with MIKCc type-box, expressed -
6 Sobic.003G117200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
7 Sobic.006G163300 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
8 Sobic.001G071600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
9 Sobic.010G194600 CW-type Zinc Finger, putative, expressed -
10 Sobic.003G006000 expressed protein -
11 Sobic.003G207000 expressed protein -
12 Sobic.002G360600 expressed protein -
13 Sobic.003G088600 transcription factor X1, putative, expressed -
14 Sobic.002G078900 agenet domain containing protein, expressed -
15 Sobic.001G086400 OsMADS34 - MADS-box family gene with MIKCc type-box, expressed -
16 Sobic.009G048300 transcription factor X1, putative, expressed -
17 Sobic.003G191600 expressed protein -
18 Sobic.010G247000 expressed protein -
19 Sobic.002G205000 ZOS9-06 - C2H2 zinc finger protein, expressed -
20 Sobic.004G220200 expressed protein -


Gene co-expression network
sample Sobic001G137600 Sobic001G137600 Sobic007G033700 Sobic007G033700 Sobic001G137600--Sobic007G033700 Sobic006G271600 Sobic006G271600 Sobic001G137600--Sobic006G271600 Sobic009G243000 Sobic009G243000 Sobic001G137600--Sobic009G243000 Sobic003G046400 Sobic003G046400 Sobic001G137600--Sobic003G046400 Sobic001G455900 Sobic001G455900 Sobic001G137600--Sobic001G455900 Sobic003G117200 Sobic003G117200 Sobic001G137600--Sobic003G117200 Sobic006G163300 Sobic006G163300 Sobic001G137600--Sobic006G163300 Sobic001G071600 Sobic001G071600 Sobic001G137600--Sobic001G071600 Sobic010G194600 Sobic010G194600 Sobic001G137600--Sobic010G194600 Sobic007G033700--Sobic003G046400 Sobic007G033700--Sobic009G243000 Sobic007G033700--Sobic001G137600 Sobic007G033700--Sobic001G455900 Sobic007G033700--Sobic006G163300 Sobic010G070900 Sobic010G070900 Sobic007G033700--Sobic010G070900 Sobic007G033700--Sobic006G271600 Sobic007G033700--Sobic001G071600 Sobic004G237000 Sobic004G237000 Sobic007G033700--Sobic004G237000 Sobic006G271600--Sobic001G071600 Sobic006G271600--Sobic010G194600 Sobic006G271600--Sobic003G117200 Sobic006G271600--Sobic009G243000 Sobic003G300000 Sobic003G300000 Sobic006G271600--Sobic003G300000 Sobic002G078900 Sobic002G078900 Sobic006G271600--Sobic002G078900 Sobic006G271600--Sobic003G046400 Sobic010G183800 Sobic010G183800 Sobic006G271600--Sobic010G183800 Sobic003G088600 Sobic003G088600 Sobic006G271600--Sobic003G088600 Sobic009G243000--Sobic007G033700 Sobic009G243000--Sobic002G078900 Sobic009G243000--Sobic006G271600 Sobic009G243000--Sobic001G071600 Sobic002G205000 Sobic002G205000 Sobic009G243000--Sobic002G205000 Sobic003G006000 Sobic003G006000 Sobic009G243000--Sobic003G006000 Sobic009G243000--Sobic003G046400 Sobic009G243000--Sobic001G137600 Sobic002G258000 Sobic002G258000 Sobic009G243000--Sobic002G258000 Sobic003G046400--Sobic001G455900 Sobic003G046400--Sobic001G071600 Sobic003G046400--Sobic007G033700 Sobic001G106500 Sobic001G106500 Sobic003G046400--Sobic001G106500 Sobic003G046400--Sobic006G271600 Sobic003G046400--Sobic010G183800 Sobic003G046400--Sobic006G163300 Sobic003G046400--Sobic010G070900 Sobic009G048300 Sobic009G048300 Sobic003G046400--Sobic009G048300 Sobic001G455900--Sobic003G046400 Sobic001G455900--Sobic006G163300 Sobic001G455900--Sobic007G033700 Sobic001G455900--Sobic009G243000 Sobic010G247000 Sobic010G247000 Sobic001G455900--Sobic010G247000 Sobic001G455900--Sobic006G271600 Sobic001G455900--Sobic001G071600 Sobic001G455900--Sobic001G137600 Sobic001G455900--Sobic010G070900 Sobic003G117200--Sobic006G271600 Sobic003G117200--Sobic002G078900 Sobic003G117200--Sobic010G183800 Sobic003G117200--Sobic003G046400 Sobic003G117200--Sobic003G300000 Sobic003G117200--Sobic001G071600 Sobic003G117200--Sobic009G243000 Sobic003G117200--Sobic003G006000 Sobic003G117200--Sobic009G048300 Sobic002G360600 Sobic002G360600 Sobic006G163300--Sobic002G360600 Sobic006G163300--Sobic001G455900 Sobic006G163300--Sobic003G046400 Sobic003G010700 Sobic003G010700 Sobic006G163300--Sobic003G010700 Sobic006G163300--Sobic010G070900 Sobic007G147200 Sobic007G147200 Sobic006G163300--Sobic007G147200 Sobic006G163300--Sobic007G033700 Sobic006G107500 Sobic006G107500 Sobic006G163300--Sobic006G107500 Sobic001G101900 Sobic001G101900 Sobic006G163300--Sobic001G101900 Sobic001G071600--Sobic006G271600 Sobic001G071600--Sobic003G046400 Sobic001G071600--Sobic010G183800 Sobic001G071600--Sobic002G078900 Sobic001G071600--Sobic009G048300 Sobic001G071600--Sobic009G243000 Sobic001G456000 Sobic001G456000 Sobic001G071600--Sobic001G456000 Sobic001G071600--Sobic003G300000 Sobic004G281000 Sobic004G281000 Sobic001G071600--Sobic004G281000 Sobic001G457600 Sobic001G457600 Sobic010G194600--Sobic001G457600 Sobic010G194600--Sobic006G271600 Sobic007G128200 Sobic007G128200 Sobic010G194600--Sobic007G128200 Sobic001G137500 Sobic001G137500 Sobic010G194600--Sobic001G137500 Sobic001G419500 Sobic001G419500 Sobic010G194600--Sobic001G419500 Sobic010G194600--Sobic003G088600 Sobic004G234600 Sobic004G234600 Sobic010G194600--Sobic004G234600 Sobic009G063700 Sobic009G063700 Sobic010G194600--Sobic009G063700 Sobic010G194600--Sobic003G300000
Octagon: transcription factors


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