Gene annotation
Transcriptome id Sobic.010G247000.1
Synonym
Functional annotation expressed protein
UniProt A0A194YMB7
Pfam -
Panther DB PTHR34545 PTHR34545:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os06g48220.1 : expressed protein
MaizeGDB (Corn) Zm00025a041803 , Zm00025a018312
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G455900 "qGL3-2/qLGY3(Ortholog in rice:Yu et al., 2018/Liu et al., 2018)"(PubMedID : 31659846)@determinacy of the spikelet meristem and determining the identity of lemmas and paleas(PubMedID : 15208396)@OsMADS1 - MADS-box family gene with MIKCc type-box, expressed -
2 Sobic.006G163300 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
3 Sobic.003G010700 plant-specific domain TIGR01568 family protein, expressed -
4 Sobic.007G033700 OsFBX309 - F-box domain containing protein, expressed -
5 Sobic.001G143400 Trihelix Family(PubMedID : 24864043)@transcription factor, putative, expressed -
6 Sobic.003G046400 transcriptional corepressor LEUNIG, putative, expressed -
7 Sobic.010G276600 PAZ domain containing protein, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
8 Sobic.009G171800 aldose 1-epimerase, putative, expressed -
9 Sobic.006G014400 pectate lyase precursor, putative, expressed K01728: pectate lyase
10 Sobic.001G379900 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
11 Sobic.010G077000 "Upregulated in leave and stem in response to drouht stress, not expredded in roots"(PubMedID : 31615416)@receptor-like protein kinase 5 precursor, putative, expressed -
12 Sobic.001G137600 ankyrin, putative, expressed -
13 Sobic.007G170100 male sterility protein 2, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
14 Sobic.008G138000 XH domain containing protein, expressed -
15 Sobic.010G070900 keratin, type I cytoskeletal 9, putative, expressed -
16 Sobic.010G168700 GDSL-like lipase/acylhydrolase, putative, expressed -
17 Sobic.009G243000 OsFBL2 - F-box domain and LRR containing protein, expressed -
18 Sobic.007G147200 OsSub56 - Putative Subtilisin homologue, expressed -
19 Sobic.003G238800 GDSL-like lipase/acylhydrolase, putative, expressed -
20 Sobic.006G273600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic010G247000 Sobic010G247000 Sobic001G455900 Sobic001G455900 Sobic010G247000--Sobic001G455900 Sobic006G163300 Sobic006G163300 Sobic010G247000--Sobic006G163300 Sobic003G010700 Sobic003G010700 Sobic010G247000--Sobic003G010700 Sobic007G033700 Sobic007G033700 Sobic010G247000--Sobic007G033700 Sobic001G143400 Sobic001G143400 Sobic010G247000--Sobic001G143400 Sobic003G046400 Sobic003G046400 Sobic010G247000--Sobic003G046400 Sobic010G276600 Sobic010G276600 Sobic010G247000--Sobic010G276600 Sobic009G171800 Sobic009G171800 Sobic010G247000--Sobic009G171800 Sobic006G014400 Sobic006G014400 Sobic010G247000--Sobic006G014400 Sobic001G455900--Sobic003G046400 Sobic001G455900--Sobic006G163300 Sobic001G455900--Sobic007G033700 Sobic009G243000 Sobic009G243000 Sobic001G455900--Sobic009G243000 Sobic001G455900--Sobic010G247000 Sobic006G271600 Sobic006G271600 Sobic001G455900--Sobic006G271600 Sobic001G071600 Sobic001G071600 Sobic001G455900--Sobic001G071600 Sobic001G137600 Sobic001G137600 Sobic001G455900--Sobic001G137600 Sobic010G070900 Sobic010G070900 Sobic001G455900--Sobic010G070900 Sobic002G360600 Sobic002G360600 Sobic006G163300--Sobic002G360600 Sobic006G163300--Sobic001G455900 Sobic006G163300--Sobic003G046400 Sobic006G163300--Sobic003G010700 Sobic006G163300--Sobic010G070900 Sobic007G147200 Sobic007G147200 Sobic006G163300--Sobic007G147200 Sobic006G163300--Sobic007G033700 Sobic006G107500 Sobic006G107500 Sobic006G163300--Sobic006G107500 Sobic001G101900 Sobic001G101900 Sobic006G163300--Sobic001G101900 Sobic002G363300 Sobic002G363300 Sobic003G010700--Sobic002G363300 Sobic006G273600 Sobic006G273600 Sobic003G010700--Sobic006G273600 Sobic007G170100 Sobic007G170100 Sobic003G010700--Sobic007G170100 Sobic003G010700--Sobic006G163300 Sobic005G199700 Sobic005G199700 Sobic003G010700--Sobic005G199700 Sobic003G010700--Sobic002G360600 Sobic009G146700 Sobic009G146700 Sobic003G010700--Sobic009G146700 Sobic003G338700 Sobic003G338700 Sobic003G010700--Sobic003G338700 Sobic003G010700--Sobic010G276600 Sobic007G033700--Sobic003G046400 Sobic007G033700--Sobic009G243000 Sobic007G033700--Sobic001G137600 Sobic007G033700--Sobic001G455900 Sobic007G033700--Sobic006G163300 Sobic007G033700--Sobic010G070900 Sobic007G033700--Sobic006G271600 Sobic007G033700--Sobic001G071600 Sobic004G237000 Sobic004G237000 Sobic007G033700--Sobic004G237000 Sobic004G003700 Sobic004G003700 Sobic001G143400--Sobic004G003700 Sobic010G168700 Sobic010G168700 Sobic001G143400--Sobic010G168700 Sobic005G168400 Sobic005G168400 Sobic001G143400--Sobic005G168400 Sobic001G143400--Sobic007G147200 Sobic001G143400--Sobic010G070900 Sobic009G047500 Sobic009G047500 Sobic001G143400--Sobic009G047500 Sobic001G143400--Sobic005G199700 Sobic008G138000 Sobic008G138000 Sobic001G143400--Sobic008G138000 Sobic007G209200 Sobic007G209200 Sobic001G143400--Sobic007G209200 Sobic003G046400--Sobic001G455900 Sobic003G046400--Sobic001G071600 Sobic003G046400--Sobic007G033700 Sobic001G106500 Sobic001G106500 Sobic003G046400--Sobic001G106500 Sobic003G046400--Sobic006G271600 Sobic010G183800 Sobic010G183800 Sobic003G046400--Sobic010G183800 Sobic003G046400--Sobic006G163300 Sobic003G046400--Sobic010G070900 Sobic009G048300 Sobic009G048300 Sobic003G046400--Sobic009G048300 Sobic010G276600--Sobic003G010700 Sobic010G276600--Sobic010G168700 Sobic010G276600--Sobic006G273600 Sobic010G276600--Sobic005G199700 Sobic010G276600--Sobic007G170100 Sobic010G276600--Sobic003G338700 Sobic001G379900 Sobic001G379900 Sobic010G276600--Sobic001G379900 Sobic010G276600--Sobic006G163300 Sobic001G286700 Sobic001G286700 Sobic010G276600--Sobic001G286700 Sobic009G171800--Sobic010G247000 Sobic009G171800--Sobic001G455900 Sobic009G171800--Sobic001G143400 Sobic009G171800--Sobic006G163300 Sobic009G171800--Sobic003G046400 Sobic009G171800--Sobic003G010700 Sobic009G171800--Sobic010G070900 Sobic001G464800 Sobic001G464800 Sobic009G171800--Sobic001G464800 Sobic010G077000 Sobic010G077000 Sobic009G171800--Sobic010G077000 Sobic006G014400--Sobic010G247000 Sobic007G087800 Sobic007G087800 Sobic006G014400--Sobic007G087800 Sobic002G430700 Sobic002G430700 Sobic006G014400--Sobic002G430700 Sobic010G231600 Sobic010G231600 Sobic006G014400--Sobic010G231600 Sobic007G116800 Sobic007G116800 Sobic006G014400--Sobic007G116800 Sobic006G014400--Sobic006G163300 Sobic006G014400--Sobic010G077000 Sobic010G092400 Sobic010G092400 Sobic006G014400--Sobic010G092400 Sobic006G270500 Sobic006G270500 Sobic006G014400--Sobic006G270500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.