Gene annotation
Transcriptome id Sobic.009G171800.1
Synonym
Functional annotation aldose 1-epimerase, putative, expressed
UniProt A0A1B6P978
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os04g56290.6 : aldose 1-epimerase, putative, expressed
MaizeGDB (Corn) Zm00025a009461
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G247000 expressed protein -
2 Sobic.001G455900 "qGL3-2/qLGY3(Ortholog in rice:Yu et al., 2018/Liu et al., 2018)"(PubMedID : 31659846)@determinacy of the spikelet meristem and determining the identity of lemmas and paleas(PubMedID : 15208396)@OsMADS1 - MADS-box family gene with MIKCc type-box, expressed -
3 Sobic.001G143400 Trihelix Family(PubMedID : 24864043)@transcription factor, putative, expressed -
4 Sobic.006G163300 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
5 Sobic.003G046400 transcriptional corepressor LEUNIG, putative, expressed -
6 Sobic.003G010700 plant-specific domain TIGR01568 family protein, expressed -
7 Sobic.010G070900 keratin, type I cytoskeletal 9, putative, expressed -
8 Sobic.001G464800 cyclin, putative, expressed K18811: cyclin D5, plant
9 Sobic.010G077000 "Upregulated in leave and stem in response to drouht stress, not expredded in roots"(PubMedID : 31615416)@receptor-like protein kinase 5 precursor, putative, expressed -
10 Sobic.007G033700 OsFBX309 - F-box domain containing protein, expressed -
11 Sobic.003G404800 OsFBO21 - F-box and other domain containing protein, expressed -
12 Sobic.006G271600 RNA recognition motif containing protein, putative, expressed K13126: polyadenylate-binding protein
13 Sobic.003G090600 seven in absentia protein family protein, putative, expressed -
14 Sobic.002G430700 glycosyltransferase family 43 protein, putative, expressed -
15 Sobic.001G137600 ankyrin, putative, expressed -
16 Sobic.001G071600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
17 Sobic.007G147200 OsSub56 - Putative Subtilisin homologue, expressed -
18 Sobic.002G360600 expressed protein -
19 Sobic.003G238800 GDSL-like lipase/acylhydrolase, putative, expressed -
20 Sobic.006G107500 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant


Gene co-expression network
sample Sobic009G171800 Sobic009G171800 Sobic010G247000 Sobic010G247000 Sobic009G171800--Sobic010G247000 Sobic001G455900 Sobic001G455900 Sobic009G171800--Sobic001G455900 Sobic001G143400 Sobic001G143400 Sobic009G171800--Sobic001G143400 Sobic006G163300 Sobic006G163300 Sobic009G171800--Sobic006G163300 Sobic003G046400 Sobic003G046400 Sobic009G171800--Sobic003G046400 Sobic003G010700 Sobic003G010700 Sobic009G171800--Sobic003G010700 Sobic010G070900 Sobic010G070900 Sobic009G171800--Sobic010G070900 Sobic001G464800 Sobic001G464800 Sobic009G171800--Sobic001G464800 Sobic010G077000 Sobic010G077000 Sobic009G171800--Sobic010G077000 Sobic010G247000--Sobic001G455900 Sobic010G247000--Sobic006G163300 Sobic010G247000--Sobic003G010700 Sobic007G033700 Sobic007G033700 Sobic010G247000--Sobic007G033700 Sobic010G247000--Sobic001G143400 Sobic010G247000--Sobic003G046400 Sobic010G276600 Sobic010G276600 Sobic010G247000--Sobic010G276600 Sobic010G247000--Sobic009G171800 Sobic006G014400 Sobic006G014400 Sobic010G247000--Sobic006G014400 Sobic001G455900--Sobic003G046400 Sobic001G455900--Sobic006G163300 Sobic001G455900--Sobic007G033700 Sobic009G243000 Sobic009G243000 Sobic001G455900--Sobic009G243000 Sobic001G455900--Sobic010G247000 Sobic006G271600 Sobic006G271600 Sobic001G455900--Sobic006G271600 Sobic001G071600 Sobic001G071600 Sobic001G455900--Sobic001G071600 Sobic001G137600 Sobic001G137600 Sobic001G455900--Sobic001G137600 Sobic001G455900--Sobic010G070900 Sobic004G003700 Sobic004G003700 Sobic001G143400--Sobic004G003700 Sobic010G168700 Sobic010G168700 Sobic001G143400--Sobic010G168700 Sobic005G168400 Sobic005G168400 Sobic001G143400--Sobic005G168400 Sobic007G147200 Sobic007G147200 Sobic001G143400--Sobic007G147200 Sobic001G143400--Sobic010G070900 Sobic009G047500 Sobic009G047500 Sobic001G143400--Sobic009G047500 Sobic005G199700 Sobic005G199700 Sobic001G143400--Sobic005G199700 Sobic008G138000 Sobic008G138000 Sobic001G143400--Sobic008G138000 Sobic007G209200 Sobic007G209200 Sobic001G143400--Sobic007G209200 Sobic002G360600 Sobic002G360600 Sobic006G163300--Sobic002G360600 Sobic006G163300--Sobic001G455900 Sobic006G163300--Sobic003G046400 Sobic006G163300--Sobic003G010700 Sobic006G163300--Sobic010G070900 Sobic006G163300--Sobic007G147200 Sobic006G163300--Sobic007G033700 Sobic006G107500 Sobic006G107500 Sobic006G163300--Sobic006G107500 Sobic001G101900 Sobic001G101900 Sobic006G163300--Sobic001G101900 Sobic003G046400--Sobic001G455900 Sobic003G046400--Sobic001G071600 Sobic003G046400--Sobic007G033700 Sobic001G106500 Sobic001G106500 Sobic003G046400--Sobic001G106500 Sobic003G046400--Sobic006G271600 Sobic010G183800 Sobic010G183800 Sobic003G046400--Sobic010G183800 Sobic003G046400--Sobic006G163300 Sobic003G046400--Sobic010G070900 Sobic009G048300 Sobic009G048300 Sobic003G046400--Sobic009G048300 Sobic002G363300 Sobic002G363300 Sobic003G010700--Sobic002G363300 Sobic006G273600 Sobic006G273600 Sobic003G010700--Sobic006G273600 Sobic007G170100 Sobic007G170100 Sobic003G010700--Sobic007G170100 Sobic003G010700--Sobic006G163300 Sobic003G010700--Sobic005G199700 Sobic003G010700--Sobic002G360600 Sobic009G146700 Sobic009G146700 Sobic003G010700--Sobic009G146700 Sobic003G338700 Sobic003G338700 Sobic003G010700--Sobic003G338700 Sobic003G010700--Sobic010G276600 Sobic010G070900--Sobic007G147200 Sobic010G070900--Sobic002G360600 Sobic010G070900--Sobic003G046400 Sobic010G070900--Sobic006G163300 Sobic010G070900--Sobic006G107500 Sobic002G426000 Sobic002G426000 Sobic010G070900--Sobic002G426000 Sobic010G070900--Sobic007G033700 Sobic010G070900--Sobic010G168700 Sobic010G070900--Sobic001G143400 Sobic001G464800--Sobic006G163300 Sobic010G092400 Sobic010G092400 Sobic001G464800--Sobic010G092400 Sobic001G464800--Sobic007G147200 Sobic001G464800--Sobic010G070900 Sobic001G464800--Sobic006G107500 Sobic001G464800--Sobic001G101900 Sobic001G464800--Sobic002G360600 Sobic002G430700 Sobic002G430700 Sobic001G464800--Sobic002G430700 Sobic010G014500 Sobic010G014500 Sobic001G464800--Sobic010G014500 Sobic010G077000--Sobic003G338700 Sobic010G077000--Sobic010G014500 Sobic003G019900 Sobic003G019900 Sobic010G077000--Sobic003G019900 Sobic010G077000--Sobic004G003700 Sobic010G077000--Sobic006G163300 Sobic001G379900 Sobic001G379900 Sobic010G077000--Sobic001G379900 Sobic001G493900 Sobic001G493900 Sobic010G077000--Sobic001G493900 Sobic010G077000--Sobic003G010700 Sobic010G077000--Sobic007G147200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.