Gene annotation
Transcriptome id Sobic.001G464800.2,Sobic.001G464800.1
Synonym 1, ATCYCD1, CYCD1, Sb01g043610
Functional annotation cyclin, putative, expressed
UniProt A0A1B6QPT7 , C5WTS4
Pfam PF02984 PF00134
Panther DB PTHR10177 PTHR10177:SF255
NCBI CDD -
KEGG Orthology K18811; cyclin D5, plant
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT1G70210 : CYCLIN D1;1
RAP-DB (Rice) LOC_Os03g10650.1 : cyclin, putative, expressed
MaizeGDB (Corn) Zm00025a053139 , Zm00025a001147
Brachypodium -
Barley HORVU4Hr1G069970.2 , HORVU4Hr1G069970.1 , HORVU4Hr1G069970.7 , HORVU4Hr1G069970.6 , HORVU4Hr1G069970.5 , HORVU4Hr1G069970.9 , HORVU4Hr1G069970.13 , HORVU4Hr1G069970.17 , HORVU4Hr1G069970.16 , HORVU4Hr1G069970.15 , HORVU4Hr1G069970.14 , HORVU4Hr1G069970.18 , HORVU4Hr1G069970.19
Wheat TraesCS4B02G257900 , TraesCS4D02G257800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G163300 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
2 Sobic.010G092400 glycosyl transferase 8 domain containing protein, putative, expressed -
3 Sobic.007G147200 OsSub56 - Putative Subtilisin homologue, expressed -
4 Sobic.010G070900 keratin, type I cytoskeletal 9, putative, expressed -
5 Sobic.006G107500 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
6 Sobic.001G101900 SCP-like extracellular protein, expressed -
7 Sobic.002G360600 expressed protein -
8 Sobic.002G430700 glycosyltransferase family 43 protein, putative, expressed -
9 Sobic.010G014500 aspartic protease, putative, expressed -
10 Sobic.003G019900 GDSL-like lipase/acylhydrolase, putative, expressed -
11 Sobic.007G033700 OsFBX309 - F-box domain containing protein, expressed -
12 Sobic.003G046400 transcriptional corepressor LEUNIG, putative, expressed -
13 Sobic.003G085900 Glycosyl hydrolase. predicted target of sbi-miR-5568 and sbi-miR-6220 expressed in the stems of sweet sorghum(PubMedID : 26117170)@glycosyl hydrolase, family 31, putative, expressed K15925: alpha-D-xyloside xylohydrolase
14 Sobic.004G003700 Trihelix Family(PubMedID : 24864043)@expressed protein -
15 Sobic.003G010700 plant-specific domain TIGR01568 family protein, expressed -
16 Sobic.001G143400 Trihelix Family(PubMedID : 24864043)@transcription factor, putative, expressed -
17 Sobic.006G274200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Eukaryotic aspartyl protease domain containing protein, expressed -
18 Sobic.009G146700 universal stress protein domain containing protein, putative, expressed -
19 Sobic.003G316601 - -
20 Sobic.003G338700 LTPL16 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -


Gene co-expression network
sample Sobic001G464800 Sobic001G464800 Sobic006G163300 Sobic006G163300 Sobic001G464800--Sobic006G163300 Sobic010G092400 Sobic010G092400 Sobic001G464800--Sobic010G092400 Sobic007G147200 Sobic007G147200 Sobic001G464800--Sobic007G147200 Sobic010G070900 Sobic010G070900 Sobic001G464800--Sobic010G070900 Sobic006G107500 Sobic006G107500 Sobic001G464800--Sobic006G107500 Sobic001G101900 Sobic001G101900 Sobic001G464800--Sobic001G101900 Sobic002G360600 Sobic002G360600 Sobic001G464800--Sobic002G360600 Sobic002G430700 Sobic002G430700 Sobic001G464800--Sobic002G430700 Sobic010G014500 Sobic010G014500 Sobic001G464800--Sobic010G014500 Sobic006G163300--Sobic002G360600 Sobic001G455900 Sobic001G455900 Sobic006G163300--Sobic001G455900 Sobic003G046400 Sobic003G046400 Sobic006G163300--Sobic003G046400 Sobic003G010700 Sobic003G010700 Sobic006G163300--Sobic003G010700 Sobic006G163300--Sobic010G070900 Sobic006G163300--Sobic007G147200 Sobic007G033700 Sobic007G033700 Sobic006G163300--Sobic007G033700 Sobic006G163300--Sobic006G107500 Sobic006G163300--Sobic001G101900 Sobic007G116800 Sobic007G116800 Sobic010G092400--Sobic007G116800 Sobic005G062600 Sobic005G062600 Sobic010G092400--Sobic005G062600 Sobic003G085900 Sobic003G085900 Sobic010G092400--Sobic003G085900 Sobic007G007800 Sobic007G007800 Sobic010G092400--Sobic007G007800 Sobic009G184200 Sobic009G184200 Sobic010G092400--Sobic009G184200 Sobic010G269700 Sobic010G269700 Sobic010G092400--Sobic010G269700 Sobic007G087800 Sobic007G087800 Sobic010G092400--Sobic007G087800 Sobic003G387700 Sobic003G387700 Sobic010G092400--Sobic003G387700 Sobic008G070700 Sobic008G070700 Sobic010G092400--Sobic008G070700 Sobic007G147200--Sobic010G070900 Sobic010G255000 Sobic010G255000 Sobic007G147200--Sobic010G255000 Sobic004G003700 Sobic004G003700 Sobic007G147200--Sobic004G003700 Sobic007G147200--Sobic003G046400 Sobic007G147200--Sobic006G163300 Sobic001G143400 Sobic001G143400 Sobic007G147200--Sobic001G143400 Sobic003G019900 Sobic003G019900 Sobic007G147200--Sobic003G019900 Sobic007G147200--Sobic006G107500 Sobic001G101700 Sobic001G101700 Sobic007G147200--Sobic001G101700 Sobic010G070900--Sobic007G147200 Sobic010G070900--Sobic002G360600 Sobic010G070900--Sobic003G046400 Sobic010G070900--Sobic006G163300 Sobic010G070900--Sobic006G107500 Sobic002G426000 Sobic002G426000 Sobic010G070900--Sobic002G426000 Sobic010G070900--Sobic007G033700 Sobic010G168700 Sobic010G168700 Sobic010G070900--Sobic010G168700 Sobic010G070900--Sobic001G143400 Sobic006G107500--Sobic002G360600 Sobic006G107500--Sobic010G070900 Sobic010G087600 Sobic010G087600 Sobic006G107500--Sobic010G087600 Sobic006G107500--Sobic003G085900 Sobic006G107500--Sobic006G163300 Sobic009G146700 Sobic009G146700 Sobic006G107500--Sobic009G146700 Sobic006G107500--Sobic007G147200 Sobic006G107500--Sobic002G430700 Sobic003G338700 Sobic003G338700 Sobic006G107500--Sobic003G338700 Sobic001G101900--Sobic006G163300 Sobic001G101900--Sobic007G147200 Sobic006G274200 Sobic006G274200 Sobic001G101900--Sobic006G274200 Sobic001G101900--Sobic010G070900 Sobic001G101900--Sobic003G019900 Sobic001G101900--Sobic002G360600 Sobic001G101900--Sobic004G003700 Sobic009G087700 Sobic009G087700 Sobic001G101900--Sobic009G087700 Sobic003G002000 Sobic003G002000 Sobic001G101900--Sobic003G002000 Sobic002G360600--Sobic006G107500 Sobic002G360600--Sobic006G163300 Sobic002G360600--Sobic010G087600 Sobic002G360600--Sobic010G070900 Sobic002G360600--Sobic003G010700 Sobic002G360600--Sobic003G085900 Sobic002G360600--Sobic009G146700 Sobic002G360600--Sobic003G338700 Sobic002G360600--Sobic003G046400 Sobic002G430700--Sobic006G107500 Sobic002G430700--Sobic003G085900 Sobic002G430700--Sobic006G163300 Sobic002G430700--Sobic002G360600 Sobic002G430700--Sobic010G070900 Sobic003G090600 Sobic003G090600 Sobic002G430700--Sobic003G090600 Sobic002G430700--Sobic003G046400 Sobic002G430700--Sobic007G147200 Sobic002G430700--Sobic010G014500 Sobic010G014500--Sobic003G338700 Sobic010G077000 Sobic010G077000 Sobic010G014500--Sobic010G077000 Sobic005G199700 Sobic005G199700 Sobic010G014500--Sobic005G199700 Sobic010G014500--Sobic003G019900 Sobic010G014700 Sobic010G014700 Sobic010G014500--Sobic010G014700 Sobic010G014500--Sobic009G146700 Sobic001G299600 Sobic001G299600 Sobic010G014500--Sobic001G299600 Sobic007G165800 Sobic007G165800 Sobic010G014500--Sobic007G165800 Sobic007G180200 Sobic007G180200 Sobic010G014500--Sobic007G180200
Octagon: transcription factors


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