Gene annotation
Transcriptome id Sobic.003G316601.1
Synonym -
Functional annotation -
UniProt A0A1W0VZV5
Pfam -
Panther DB PTHR33871 PTHR33871:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G11125 : -
RAP-DB (Rice) LOC_Os01g57150.1 : SR protein related family member, putative, expressed
MaizeGDB (Corn) Zm00025a039890 , Zm00025a027284 , Zm00025a044148
Brachypodium KQK10069
Barley HORVU3Hr1G076710.2 , HORVU3Hr1G076710.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G237000 down-regulated TF in developmental senescence(PubMedID : 27586543)@"PGL2(Ortholog in rice:Heang and Sassa, 2012b(PubMedID : 31659886)@helix-loop-helix DNA-binding domain containing protein, expressed -
2 Sobic.007G147200 OsSub56 - Putative Subtilisin homologue, expressed -
3 Sobic.001G106500 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
4 Sobic.003G085900 Glycosyl hydrolase. predicted target of sbi-miR-5568 and sbi-miR-6220 expressed in the stems of sweet sorghum(PubMedID : 26117170)@glycosyl hydrolase, family 31, putative, expressed K15925: alpha-D-xyloside xylohydrolase
5 Sobic.003G046400 transcriptional corepressor LEUNIG, putative, expressed -
6 Sobic.010G070900 keratin, type I cytoskeletal 9, putative, expressed -
7 Sobic.006G107500 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.003G092300 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
9 Sobic.010G255000 uncharacterized protein At4g06744 precursor, putative, expressed -
10 Sobic.002G289800 HMG1/2, putative, expressed -
11 Sobic.001G138800 GCRP4 - Glycine and cysteine rich family protein precursor, expressed -
12 Sobic.010G183800 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
13 Sobic.002G178800 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
14 Sobic.001G463301 - -
15 Sobic.002G360600 expressed protein -
16 Sobic.007G121200 YDG/SRA domain containing protein, expressed -
17 Sobic.010G048600 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
18 Sobic.007G033700 OsFBX309 - F-box domain containing protein, expressed -
19 Sobic.001G459300 - -
20 Sobic.002G343600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@-(PubMedID : 23108465)@polygalacturonase inhibitor 1 precursor, putative, expressed -


Gene co-expression network
sample Sobic003G316601 Sobic003G316601 Sobic004G237000 Sobic004G237000 Sobic003G316601--Sobic004G237000 Sobic007G147200 Sobic007G147200 Sobic003G316601--Sobic007G147200 Sobic001G106500 Sobic001G106500 Sobic003G316601--Sobic001G106500 Sobic003G085900 Sobic003G085900 Sobic003G316601--Sobic003G085900 Sobic003G046400 Sobic003G046400 Sobic003G316601--Sobic003G046400 Sobic010G070900 Sobic010G070900 Sobic003G316601--Sobic010G070900 Sobic006G107500 Sobic006G107500 Sobic003G316601--Sobic006G107500 Sobic003G092300 Sobic003G092300 Sobic003G316601--Sobic003G092300 Sobic010G255000 Sobic010G255000 Sobic003G316601--Sobic010G255000 Sobic004G237000--Sobic003G316601 Sobic004G237000--Sobic003G085900 Sobic007G033700 Sobic007G033700 Sobic004G237000--Sobic007G033700 Sobic004G237000--Sobic003G046400 Sobic004G237000--Sobic010G070900 Sobic002G426000 Sobic002G426000 Sobic004G237000--Sobic002G426000 Sobic004G237000--Sobic007G147200 Sobic009G243000 Sobic009G243000 Sobic004G237000--Sobic009G243000 Sobic004G237000--Sobic001G106500 Sobic007G147200--Sobic010G070900 Sobic007G147200--Sobic010G255000 Sobic004G003700 Sobic004G003700 Sobic007G147200--Sobic004G003700 Sobic007G147200--Sobic003G046400 Sobic006G163300 Sobic006G163300 Sobic007G147200--Sobic006G163300 Sobic001G143400 Sobic001G143400 Sobic007G147200--Sobic001G143400 Sobic003G019900 Sobic003G019900 Sobic007G147200--Sobic003G019900 Sobic007G147200--Sobic006G107500 Sobic001G101700 Sobic001G101700 Sobic007G147200--Sobic001G101700 Sobic001G459300 Sobic001G459300 Sobic001G106500--Sobic001G459300 Sobic010G048600 Sobic010G048600 Sobic001G106500--Sobic010G048600 Sobic001G106500--Sobic003G092300 Sobic001G456000 Sobic001G456000 Sobic001G106500--Sobic001G456000 Sobic005G070700 Sobic005G070700 Sobic001G106500--Sobic005G070700 Sobic001G106500--Sobic003G046400 Sobic002G078900 Sobic002G078900 Sobic001G106500--Sobic002G078900 Sobic001G459400 Sobic001G459400 Sobic001G106500--Sobic001G459400 Sobic010G183800 Sobic010G183800 Sobic001G106500--Sobic010G183800 Sobic003G085900--Sobic006G107500 Sobic002G360600 Sobic002G360600 Sobic003G085900--Sobic002G360600 Sobic003G085900--Sobic004G237000 Sobic010G092400 Sobic010G092400 Sobic003G085900--Sobic010G092400 Sobic002G430700 Sobic002G430700 Sobic003G085900--Sobic002G430700 Sobic003G085900--Sobic007G147200 Sobic003G085900--Sobic006G163300 Sobic003G085900--Sobic003G046400 Sobic003G085900--Sobic003G316601 Sobic001G455900 Sobic001G455900 Sobic003G046400--Sobic001G455900 Sobic001G071600 Sobic001G071600 Sobic003G046400--Sobic001G071600 Sobic003G046400--Sobic007G033700 Sobic003G046400--Sobic001G106500 Sobic006G271600 Sobic006G271600 Sobic003G046400--Sobic006G271600 Sobic003G046400--Sobic010G183800 Sobic003G046400--Sobic006G163300 Sobic003G046400--Sobic010G070900 Sobic009G048300 Sobic009G048300 Sobic003G046400--Sobic009G048300 Sobic010G070900--Sobic007G147200 Sobic010G070900--Sobic002G360600 Sobic010G070900--Sobic003G046400 Sobic010G070900--Sobic006G163300 Sobic010G070900--Sobic006G107500 Sobic010G070900--Sobic002G426000 Sobic010G070900--Sobic007G033700 Sobic010G168700 Sobic010G168700 Sobic010G070900--Sobic010G168700 Sobic010G070900--Sobic001G143400 Sobic006G107500--Sobic002G360600 Sobic006G107500--Sobic010G070900 Sobic010G087600 Sobic010G087600 Sobic006G107500--Sobic010G087600 Sobic006G107500--Sobic003G085900 Sobic006G107500--Sobic006G163300 Sobic009G146700 Sobic009G146700 Sobic006G107500--Sobic009G146700 Sobic006G107500--Sobic007G147200 Sobic006G107500--Sobic002G430700 Sobic003G338700 Sobic003G338700 Sobic006G107500--Sobic003G338700 Sobic003G092300--Sobic001G459400 Sobic003G092300--Sobic010G183800 Sobic003G092300--Sobic001G459300 Sobic003G092300--Sobic001G106500 Sobic003G300000 Sobic003G300000 Sobic003G092300--Sobic003G300000 Sobic003G092300--Sobic010G048600 Sobic009G075500 Sobic009G075500 Sobic003G092300--Sobic009G075500 Sobic001G158100 Sobic001G158100 Sobic003G092300--Sobic001G158100 Sobic003G092300--Sobic005G070700 Sobic010G255000--Sobic007G147200 Sobic010G255000--Sobic001G101700 Sobic007G201900 Sobic007G201900 Sobic010G255000--Sobic007G201900 Sobic010G255000--Sobic003G046400 Sobic002G255600 Sobic002G255600 Sobic010G255000--Sobic002G255600 Sobic007G137101 Sobic007G137101 Sobic010G255000--Sobic007G137101 Sobic010G255000--Sobic001G106500 Sobic007G121200 Sobic007G121200 Sobic010G255000--Sobic007G121200 Sobic010G220800 Sobic010G220800 Sobic010G255000--Sobic010G220800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.