Gene annotation
Transcriptome id Sobic.004G237000.1
Synonym KDR, Sb04g027930
Functional annotation down-regulated TF in developmental senescence (PubMedID : 27586543)
"PGL2(Ortholog in rice:Heang and Sassa, 2012b (PubMedID : 31659886)
helix-loop-helix DNA-binding domain containing protein, expressed
UniProt C5XYS5
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF84
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G26945 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os02g51320.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQK01930 , KQK18885
Barley -
Wheat TraesCS4A02G016000 , TraesCS6B02G334600 , TraesCS4B02G288000 , TraesCS6D02G285300 , TraesCS6A02G306200
Populus -


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cDNA sequences
Sobic.004G237000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G316601 - -
2 Sobic.003G085900 Glycosyl hydrolase. predicted target of sbi-miR-5568 and sbi-miR-6220 expressed in the stems of sweet sorghum(PubMedID : 26117170)@glycosyl hydrolase, family 31, putative, expressed K15925: alpha-D-xyloside xylohydrolase
3 Sobic.007G033700 OsFBX309 - F-box domain containing protein, expressed -
4 Sobic.003G046400 transcriptional corepressor LEUNIG, putative, expressed -
5 Sobic.010G070900 keratin, type I cytoskeletal 9, putative, expressed -
6 Sobic.002G426000 - -
7 Sobic.007G147200 OsSub56 - Putative Subtilisin homologue, expressed -
8 Sobic.009G243000 OsFBL2 - F-box domain and LRR containing protein, expressed -
9 Sobic.001G106500 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
10 Sobic.002G205000 ZOS9-06 - C2H2 zinc finger protein, expressed -
11 Sobic.003G084100 expressed protein -
12 Sobic.001G138800 GCRP4 - Glycine and cysteine rich family protein precursor, expressed -
13 Sobic.002G178800 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
14 Sobic.003G319900 "domain confirmed by Pfam database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.1 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
15 Sobic.006G163300 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
16 Sobic.002G078900 agenet domain containing protein, expressed -
17 Sobic.002G360600 expressed protein -
18 Sobic.001G455900 "qGL3-2/qLGY3(Ortholog in rice:Yu et al., 2018/Liu et al., 2018)"(PubMedID : 31659846)@determinacy of the spikelet meristem and determining the identity of lemmas and paleas(PubMedID : 15208396)@OsMADS1 - MADS-box family gene with MIKCc type-box, expressed -
19 Sobic.002G289800 HMG1/2, putative, expressed -
20 Sobic.003G117200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -


Gene co-expression network
sample Sobic004G237000 Sobic004G237000 Sobic003G316601 Sobic003G316601 Sobic004G237000--Sobic003G316601 Sobic003G085900 Sobic003G085900 Sobic004G237000--Sobic003G085900 Sobic007G033700 Sobic007G033700 Sobic004G237000--Sobic007G033700 Sobic003G046400 Sobic003G046400 Sobic004G237000--Sobic003G046400 Sobic010G070900 Sobic010G070900 Sobic004G237000--Sobic010G070900 Sobic002G426000 Sobic002G426000 Sobic004G237000--Sobic002G426000 Sobic007G147200 Sobic007G147200 Sobic004G237000--Sobic007G147200 Sobic009G243000 Sobic009G243000 Sobic004G237000--Sobic009G243000 Sobic001G106500 Sobic001G106500 Sobic004G237000--Sobic001G106500 Sobic003G316601--Sobic004G237000 Sobic003G316601--Sobic007G147200 Sobic003G316601--Sobic001G106500 Sobic003G316601--Sobic003G085900 Sobic003G316601--Sobic003G046400 Sobic003G316601--Sobic010G070900 Sobic006G107500 Sobic006G107500 Sobic003G316601--Sobic006G107500 Sobic003G092300 Sobic003G092300 Sobic003G316601--Sobic003G092300 Sobic010G255000 Sobic010G255000 Sobic003G316601--Sobic010G255000 Sobic003G085900--Sobic006G107500 Sobic002G360600 Sobic002G360600 Sobic003G085900--Sobic002G360600 Sobic003G085900--Sobic004G237000 Sobic010G092400 Sobic010G092400 Sobic003G085900--Sobic010G092400 Sobic002G430700 Sobic002G430700 Sobic003G085900--Sobic002G430700 Sobic003G085900--Sobic007G147200 Sobic006G163300 Sobic006G163300 Sobic003G085900--Sobic006G163300 Sobic003G085900--Sobic003G046400 Sobic003G085900--Sobic003G316601 Sobic007G033700--Sobic003G046400 Sobic007G033700--Sobic009G243000 Sobic001G137600 Sobic001G137600 Sobic007G033700--Sobic001G137600 Sobic001G455900 Sobic001G455900 Sobic007G033700--Sobic001G455900 Sobic007G033700--Sobic006G163300 Sobic007G033700--Sobic010G070900 Sobic006G271600 Sobic006G271600 Sobic007G033700--Sobic006G271600 Sobic001G071600 Sobic001G071600 Sobic007G033700--Sobic001G071600 Sobic007G033700--Sobic004G237000 Sobic003G046400--Sobic001G455900 Sobic003G046400--Sobic001G071600 Sobic003G046400--Sobic007G033700 Sobic003G046400--Sobic001G106500 Sobic003G046400--Sobic006G271600 Sobic010G183800 Sobic010G183800 Sobic003G046400--Sobic010G183800 Sobic003G046400--Sobic006G163300 Sobic003G046400--Sobic010G070900 Sobic009G048300 Sobic009G048300 Sobic003G046400--Sobic009G048300 Sobic010G070900--Sobic007G147200 Sobic010G070900--Sobic002G360600 Sobic010G070900--Sobic003G046400 Sobic010G070900--Sobic006G163300 Sobic010G070900--Sobic006G107500 Sobic010G070900--Sobic002G426000 Sobic010G070900--Sobic007G033700 Sobic010G168700 Sobic010G168700 Sobic010G070900--Sobic010G168700 Sobic001G143400 Sobic001G143400 Sobic010G070900--Sobic001G143400 Sobic002G268300 Sobic002G268300 Sobic002G426000--Sobic002G268300 Sobic004G000800 Sobic004G000800 Sobic002G426000--Sobic004G000800 Sobic002G426000--Sobic010G070900 Sobic010G220800 Sobic010G220800 Sobic002G426000--Sobic010G220800 Sobic002G426000--Sobic010G168700 Sobic007G121200 Sobic007G121200 Sobic002G426000--Sobic007G121200 Sobic002G426000--Sobic003G046400 Sobic002G426000--Sobic004G237000 Sobic002G426000--Sobic007G033700 Sobic007G147200--Sobic010G070900 Sobic007G147200--Sobic010G255000 Sobic004G003700 Sobic004G003700 Sobic007G147200--Sobic004G003700 Sobic007G147200--Sobic003G046400 Sobic007G147200--Sobic006G163300 Sobic007G147200--Sobic001G143400 Sobic003G019900 Sobic003G019900 Sobic007G147200--Sobic003G019900 Sobic007G147200--Sobic006G107500 Sobic001G101700 Sobic001G101700 Sobic007G147200--Sobic001G101700 Sobic009G243000--Sobic007G033700 Sobic002G078900 Sobic002G078900 Sobic009G243000--Sobic002G078900 Sobic009G243000--Sobic006G271600 Sobic009G243000--Sobic001G071600 Sobic002G205000 Sobic002G205000 Sobic009G243000--Sobic002G205000 Sobic003G006000 Sobic003G006000 Sobic009G243000--Sobic003G006000 Sobic009G243000--Sobic003G046400 Sobic009G243000--Sobic001G137600 Sobic002G258000 Sobic002G258000 Sobic009G243000--Sobic002G258000 Sobic001G459300 Sobic001G459300 Sobic001G106500--Sobic001G459300 Sobic010G048600 Sobic010G048600 Sobic001G106500--Sobic010G048600 Sobic001G106500--Sobic003G092300 Sobic001G456000 Sobic001G456000 Sobic001G106500--Sobic001G456000 Sobic005G070700 Sobic005G070700 Sobic001G106500--Sobic005G070700 Sobic001G106500--Sobic003G046400 Sobic001G106500--Sobic002G078900 Sobic001G459400 Sobic001G459400 Sobic001G106500--Sobic001G459400 Sobic001G106500--Sobic010G183800
Octagon: transcription factors


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