Gene annotation
Transcriptome id Sobic.002G289800.2,Sobic.002G289800.3
Synonym NFD03, NFD3, HMGB3, Sb02g032140
Functional annotation HMG1/2, putative, expressed
UniProt A0A1W0W654 , A0A1W0W668
Pfam PF00505
Panther DB PTHR13711 PTHR13711:SF218 PTHR13711 PTHR13711:SF187
NCBI CDD KOG0381; HMG box-containing protein
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003682chromatin binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G20696 : high mobility group B3
RAP-DB (Rice) LOC_Os09g37910.1 : HMG1/2, putative, expressed
MaizeGDB (Corn) Zm00025a014520 , Zm00025a047959
Brachypodium KQJ91374
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G289800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G289900 AT hook motif domain containing protein, expressed -
2 Sobic.007G017700 IQ calmodulin-binding motif domain containing protein, expressed -
3 Sobic.003G316601 - -
4 Sobic.004G237000 down-regulated TF in developmental senescence(PubMedID : 27586543)@"PGL2(Ortholog in rice:Heang and Sassa, 2012b(PubMedID : 31659886)@helix-loop-helix DNA-binding domain containing protein, expressed -
5 Sobic.004G327600 expressed protein -
6 Sobic.007G132900 linker histone H1 and H5 family protein, expressed -
7 Sobic.010G222100 MBTB10 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
8 Sobic.001G300400 expansin precursor, putative, expressed -
9 Sobic.006G081800 histone H3, putative, expressed K11253: histone H3
10 Sobic.001G091500 expressed protein -
11 Sobic.001G105800 OsFBX109 - F-box domain containing protein, expressed -
12 Sobic.003G085900 Glycosyl hydrolase. predicted target of sbi-miR-5568 and sbi-miR-6220 expressed in the stems of sweet sorghum(PubMedID : 26117170)@glycosyl hydrolase, family 31, putative, expressed K15925: alpha-D-xyloside xylohydrolase
13 Sobic.009G120700 microtubule-binding protein TANGLED1, putative, expressed K18636: microtubule-binding protein TANGLED1
14 Sobic.004G229200 phosphate-induced protein 1 conserved region domain containing protein, expressed -
15 Sobic.003G354232 - -
16 Sobic.003G387700 expressed protein -
17 Sobic.001G505000 cyclin-dependent kinases regulatory subunit 1, putative, expressed K02219: cyclin-dependent kinase regulatory subunit CKS1
18 Sobic.003G102000 expressed protein -
19 Sobic.002G128000 receptor protein kinase, putative, expressed -
20 Sobic.009G087700 proline-rich family protein, putative, expressed -


Gene co-expression network
sample Sobic002G289800 Sobic002G289800 Sobic001G289900 Sobic001G289900 Sobic002G289800--Sobic001G289900 Sobic007G017700 Sobic007G017700 Sobic002G289800--Sobic007G017700 Sobic003G316601 Sobic003G316601 Sobic002G289800--Sobic003G316601 Sobic004G237000 Sobic004G237000 Sobic002G289800--Sobic004G237000 Sobic004G327600 Sobic004G327600 Sobic002G289800--Sobic004G327600 Sobic007G132900 Sobic007G132900 Sobic002G289800--Sobic007G132900 Sobic010G222100 Sobic010G222100 Sobic002G289800--Sobic010G222100 Sobic001G300400 Sobic001G300400 Sobic002G289800--Sobic001G300400 Sobic006G081800 Sobic006G081800 Sobic002G289800--Sobic006G081800 Sobic010G105400 Sobic010G105400 Sobic001G289900--Sobic010G105400 Sobic001G289900--Sobic002G289800 Sobic001G289900--Sobic007G132900 Sobic003G387700 Sobic003G387700 Sobic001G289900--Sobic003G387700 Sobic004G047100 Sobic004G047100 Sobic001G289900--Sobic004G047100 Sobic001G398400 Sobic001G398400 Sobic001G289900--Sobic001G398400 Sobic004G273000 Sobic004G273000 Sobic001G289900--Sobic004G273000 Sobic001G091500 Sobic001G091500 Sobic001G289900--Sobic001G091500 Sobic002G426800 Sobic002G426800 Sobic001G289900--Sobic002G426800 Sobic007G017700--Sobic003G387700 Sobic007G017700--Sobic002G289800 Sobic007G207700 Sobic007G207700 Sobic007G017700--Sobic007G207700 Sobic010G202100 Sobic010G202100 Sobic007G017700--Sobic010G202100 Sobic006G134200 Sobic006G134200 Sobic007G017700--Sobic006G134200 Sobic010G215300 Sobic010G215300 Sobic007G017700--Sobic010G215300 Sobic007G017700--Sobic001G091500 Sobic010G234800 Sobic010G234800 Sobic007G017700--Sobic010G234800 Sobic008G114500 Sobic008G114500 Sobic007G017700--Sobic008G114500 Sobic003G316601--Sobic004G237000 Sobic007G147200 Sobic007G147200 Sobic003G316601--Sobic007G147200 Sobic001G106500 Sobic001G106500 Sobic003G316601--Sobic001G106500 Sobic003G085900 Sobic003G085900 Sobic003G316601--Sobic003G085900 Sobic003G046400 Sobic003G046400 Sobic003G316601--Sobic003G046400 Sobic010G070900 Sobic010G070900 Sobic003G316601--Sobic010G070900 Sobic006G107500 Sobic006G107500 Sobic003G316601--Sobic006G107500 Sobic003G092300 Sobic003G092300 Sobic003G316601--Sobic003G092300 Sobic010G255000 Sobic010G255000 Sobic003G316601--Sobic010G255000 Sobic004G237000--Sobic003G316601 Sobic004G237000--Sobic003G085900 Sobic007G033700 Sobic007G033700 Sobic004G237000--Sobic007G033700 Sobic004G237000--Sobic003G046400 Sobic004G237000--Sobic010G070900 Sobic002G426000 Sobic002G426000 Sobic004G237000--Sobic002G426000 Sobic004G237000--Sobic007G147200 Sobic009G243000 Sobic009G243000 Sobic004G237000--Sobic009G243000 Sobic004G237000--Sobic001G106500 Sobic001G105800 Sobic001G105800 Sobic004G327600--Sobic001G105800 Sobic004G327600--Sobic002G289800 Sobic002G128000 Sobic002G128000 Sobic004G327600--Sobic002G128000 Sobic004G327600--Sobic003G085900 Sobic010G092400 Sobic010G092400 Sobic004G327600--Sobic010G092400 Sobic004G327600--Sobic001G289900 Sobic004G075900 Sobic004G075900 Sobic004G327600--Sobic004G075900 Sobic005G062600 Sobic005G062600 Sobic004G327600--Sobic005G062600 Sobic003G444300 Sobic003G444300 Sobic004G327600--Sobic003G444300 Sobic007G132900--Sobic001G289900 Sobic006G065400 Sobic006G065400 Sobic007G132900--Sobic006G065400 Sobic007G132900--Sobic002G289800 Sobic003G102000 Sobic003G102000 Sobic007G132900--Sobic003G102000 Sobic009G120700 Sobic009G120700 Sobic007G132900--Sobic009G120700 Sobic010G119300 Sobic010G119300 Sobic007G132900--Sobic010G119300 Sobic003G260700 Sobic003G260700 Sobic007G132900--Sobic003G260700 Sobic004G198100 Sobic004G198100 Sobic007G132900--Sobic004G198100 Sobic002G353200 Sobic002G353200 Sobic007G132900--Sobic002G353200 Sobic010G222100--Sobic002G289800 Sobic009G033800 Sobic009G033800 Sobic010G222100--Sobic009G033800 Sobic010G222100--Sobic002G353200 Sobic010G215800 Sobic010G215800 Sobic010G222100--Sobic010G215800 Sobic010G222100--Sobic001G289900 Sobic001G505000 Sobic001G505000 Sobic010G222100--Sobic001G505000 Sobic005G129700 Sobic005G129700 Sobic010G222100--Sobic005G129700 Sobic010G222100--Sobic007G132900 Sobic003G279100 Sobic003G279100 Sobic010G222100--Sobic003G279100 Sobic002G351100 Sobic002G351100 Sobic001G300400--Sobic002G351100 Sobic001G300400--Sobic001G289900 Sobic006G236800 Sobic006G236800 Sobic001G300400--Sobic006G236800 Sobic003G297200 Sobic003G297200 Sobic001G300400--Sobic003G297200 Sobic001G300400--Sobic004G047100 Sobic001G300400--Sobic002G289800 Sobic001G300400--Sobic002G426800 Sobic001G300400--Sobic003G102000 Sobic001G300400--Sobic001G091500 Sobic006G134900 Sobic006G134900 Sobic006G081800--Sobic006G134900 Sobic004G229200 Sobic004G229200 Sobic006G081800--Sobic004G229200 Sobic001G169800 Sobic001G169800 Sobic006G081800--Sobic001G169800 Sobic006G081800--Sobic001G105800 Sobic006G081800--Sobic007G017700 Sobic006G081800--Sobic002G289800 Sobic001G238900 Sobic001G238900 Sobic006G081800--Sobic001G238900 Sobic002G246900 Sobic002G246900 Sobic006G081800--Sobic002G246900 Sobic004G279601 Sobic004G279601 Sobic006G081800--Sobic004G279601
Octagon: transcription factors


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