Gene annotation
Transcriptome id Sobic.006G081800.1
Synonym Sb06g016850
Functional annotation histone H3, putative, expressed
UniProt -
Pfam PF00125
Panther DB PTHR11426
NCBI CDD KOG1745; Histones H3 and H4
KEGG Orthology K11253; histone H3
Gene Ontology GO:0003677; DNA binding GO:0000786nucleosome


Orthologs (automatic annotation)
TAIR AT1G09200 : Histone superfamily protein
RAP-DB (Rice) LOC_Os04g34240.1 : histone H3, putative, expressed
MaizeGDB (Corn) Zm00025a056027 , Zm00025a011450 , Zm00025a039567 , Zm00025a056046 , Zm00025a023384 , Zm00025a026719 , Zm00025a031558 , Zm00025a041588 , Zm00025a011448 , Zm00025a049961 , Zm00025a025526 , Zm00025a050169 , Zm00025a041383 , Zm00025a020589
Brachypodium PNT61061 , PNT73249 , KQK06043 , KQK05154 , KQK06659 , KQJ86807 , KQJ99805 , KQK19721 , PNT76594
Barley HORVU2Hr1G079550.2 , HORVU2Hr1G079550.1 , HORVU1Hr1G058490.1 , HORVU1Hr1G017800.4 , HORVU1Hr1G017800.3 , HORVU1Hr1G017800.2 , HORVU1Hr1G017800.1 , HORVU1Hr1G058490.3 , HORVU6Hr1G029190.6 , HORVU6Hr1G029190.5 , HORVU6Hr1G029190.4 , HORVU6Hr1G029190.3 , HORVU6Hr1G029190.2 , HORVU6Hr1G029190.1 , HORVU1Hr1G058490.4 , HORVU7Hr1G025160.2 , HORVU7Hr1G025160.1 , HORVU7Hr1G032270.3 , HORVU7Hr1G032270.2 , HORVU7Hr1G032270.1 , HORVU7Hr1G100690.2 , HORVU7Hr1G100690.1 , HORVU7Hr1G032270.4 , HORVU7Hr1G012820.1 , HORVU7Hr1G012820.2 , HORVU7Hr1G012820.3 , HORVU7Hr1G012820.4 , HORVU7Hr1G012820.5 , HORVU7Hr1G012820.6 , HORVU6Hr1G011820.1 , HORVU2Hr1G090210.1 , HORVU2Hr1G090210.2 , HORVU2Hr1G090210.3 , HORVU7Hr1G021840.16 , HORVU7Hr1G021840.14 , HORVU7Hr1G021840.15 , HORVU7Hr1G021840.12 , HORVU7Hr1G021840.13 , HORVU7Hr1G021840.10 , HORVU7Hr1G021840.11 , HORVU7Hr1G025200.2 , HORVU7Hr1G025200.3 , HORVU7Hr1G025200.1 , HORVU6Hr1G031580.1 , HORVU6Hr1G031580.3 , HORVU6Hr1G031580.2 , HORVU1Hr1G020070.2 , HORVU7Hr1G029190.1 , HORVU2Hr1G079560.3 , HORVU2Hr1G079560.2 , HORVU2Hr1G079560.1 , HORVU1Hr1G058490.2 , HORVU2Hr1G079560.6 , HORVU2Hr1G079560.5 , HORVU2Hr1G079560.4 , HORVU7Hr1G024990.4 , HORVU7Hr1G024990.1 , HORVU1Hr1G020070.1 , HORVU7Hr1G024990.3 , HORVU7Hr1G024990.2 , HORVU4Hr1G073150.4 , HORVU4Hr1G073150.2 , HORVU4Hr1G073150.1 , HORVU7Hr1G021840.4 , HORVU7Hr1G021840.5 , HORVU7Hr1G021840.6 , HORVU7Hr1G021840.7 , HORVU7Hr1G021840.1 , HORVU7Hr1G021840.2 , HORVU7Hr1G021840.3 , HORVU7Hr1G021840.8 , HORVU7Hr1G021840.9 , HORVU1Hr1G020070.3 , HORVU6Hr1G007470.1 , HORVU6Hr1G007470.2 , HORVU1Hr1G022400.3 , HORVU1Hr1G022400.2 , HORVU1Hr1G022400.1 , HORVU1Hr1G022400.4 , HORVU3Hr1G083350.8 , HORVU1Hr1G074340.1 , HORVU7Hr1G079790.1 , HORVU1Hr1G073670.1 , HORVU3Hr1G063270.1 , HORVU7Hr1G034470.1 , HORVU3Hr1G063270.2 , HORVU6Hr1G011520.1 , HORVU6Hr1G007820.3 , HORVU6Hr1G007820.2 , HORVU6Hr1G007820.1 , HORVU6Hr1G013290.1 , HORVU7Hr1G025330.1 , HORVU7Hr1G025150.1 , HORVU2Hr1G074240.1 , HORVU2Hr1G074240.3 , HORVU2Hr1G074240.2 , HORVU2Hr1G074240.5 , HORVU2Hr1G074240.4 , HORVU6Hr1G007820.4 , HORVU6Hr1G029200.3 , HORVU6Hr1G029200.2 , HORVU6Hr1G029200.1 , HORVU1Hr1G020050.2 , HORVU1Hr1G020050.3 , HORVU1Hr1G020050.1 , HORVU1Hr1G020050.4 , HORVU7Hr1G033030.1 , HORVU4Hr1G067970.1 , HORVU4Hr1G067970.3 , HORVU4Hr1G067970.2 , HORVU7Hr1G100450.1 , HORVU3Hr1G083350.1 , HORVU3Hr1G083350.2 , HORVU3Hr1G083350.3 , HORVU3Hr1G083350.4 , HORVU3Hr1G083350.5 , HORVU3Hr1G083350.6 , HORVU3Hr1G083350.7 , HORVU1Hr1G080190.1 , HORVU1Hr1G080190.3 , HORVU1Hr1G080190.2 , HORVU7Hr1G046350.1 , HORVU7Hr1G021840.23
Wheat TraesCS7A02G067800 , TraesCS7A02G442900 , TraesCS7D02G061900 , TraesCS6A02G038600 , TraesCS6A02G099700 , TraesCS7B02G341600 , TraesCS6D02G044300 , TraesCS4A02G423800 , TraesCSU02G092100 , TraesCS6B02G053500 , TraesCS6B02G053300 , TraesCS2B02G337200 , TraesCS7D02G061500 , TraesCS4B02G275500 , TraesCS1A02G228800 , TraesCS6B02G053200 , TraesCS3B02G167700 , TraesCS7A02G157100 , TraesCS6A02G038400 , TraesCS7D02G432000 , TraesCS4A02G421900 , TraesCS6A02G038500 , TraesCS4A02G421500
Populus -


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cDNA sequences
Sobic.006G081800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G134900 ribonucleoside-diphosphate reductase small chain, putative, expressed K10808: ribonucleoside-diphosphate reductase subunit M2
2 Sobic.004G229200 phosphate-induced protein 1 conserved region domain containing protein, expressed -
3 Sobic.001G169800 cyclin, putative, expressed K06627: cyclin-A
4 Sobic.001G105800 OsFBX109 - F-box domain containing protein, expressed -
5 Sobic.007G017700 IQ calmodulin-binding motif domain containing protein, expressed -
6 Sobic.002G289800 HMG1/2, putative, expressed -
7 Sobic.001G238900 OsFBX386 - F-box domain containing protein, expressed -
8 Sobic.002G246900 expressed protein -
9 Sobic.004G279601 - K11254: histone H4
10 Sobic.003G387700 expressed protein -
11 Sobic.002G162300 expressed protein K11270: chromosome transmission fidelity protein 8
12 Sobic.006G116500 expressed protein -
13 Sobic.009G157600 DUF740 domain containing protein, expressed -
14 Sobic.010G230000 monocopper oxidase, putative, expressed -
15 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
16 Sobic.001G091500 expressed protein -
17 Sobic.004G047100 EH domain-containing protein 1, putative, expressed K12483: EH domain-containing protein 1
18 Sobic.001G261549 - -
19 Sobic.001G078600 CAMK_CAMK_like_Aur_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
20 Sobic.006G134200 expressed protein -


Gene co-expression network
sample Sobic006G081800 Sobic006G081800 Sobic006G134900 Sobic006G134900 Sobic006G081800--Sobic006G134900 Sobic004G229200 Sobic004G229200 Sobic006G081800--Sobic004G229200 Sobic001G169800 Sobic001G169800 Sobic006G081800--Sobic001G169800 Sobic001G105800 Sobic001G105800 Sobic006G081800--Sobic001G105800 Sobic007G017700 Sobic007G017700 Sobic006G081800--Sobic007G017700 Sobic002G289800 Sobic002G289800 Sobic006G081800--Sobic002G289800 Sobic001G238900 Sobic001G238900 Sobic006G081800--Sobic001G238900 Sobic002G246900 Sobic002G246900 Sobic006G081800--Sobic002G246900 Sobic004G279601 Sobic004G279601 Sobic006G081800--Sobic004G279601 Sobic006G134900--Sobic006G081800 Sobic006G134900--Sobic001G169800 Sobic007G176800 Sobic007G176800 Sobic006G134900--Sobic007G176800 Sobic004G170500 Sobic004G170500 Sobic006G134900--Sobic004G170500 Sobic006G189200 Sobic006G189200 Sobic006G134900--Sobic006G189200 Sobic006G116500 Sobic006G116500 Sobic006G134900--Sobic006G116500 Sobic001G142000 Sobic001G142000 Sobic006G134900--Sobic001G142000 Sobic001G078600 Sobic001G078600 Sobic006G134900--Sobic001G078600 Sobic006G134900--Sobic001G105800 Sobic004G229200--Sobic006G081800 Sobic010G246400 Sobic010G246400 Sobic004G229200--Sobic010G246400 Sobic010G269700 Sobic010G269700 Sobic004G229200--Sobic010G269700 Sobic004G229200--Sobic002G289800 Sobic003G316601 Sobic003G316601 Sobic004G229200--Sobic003G316601 Sobic001G116600 Sobic001G116600 Sobic004G229200--Sobic001G116600 Sobic010G230000 Sobic010G230000 Sobic004G229200--Sobic010G230000 Sobic002G128000 Sobic002G128000 Sobic004G229200--Sobic002G128000 Sobic004G075900 Sobic004G075900 Sobic004G229200--Sobic004G075900 Sobic001G456500 Sobic001G456500 Sobic001G169800--Sobic001G456500 Sobic001G169800--Sobic006G116500 Sobic003G444300 Sobic003G444300 Sobic001G169800--Sobic003G444300 Sobic001G083300 Sobic001G083300 Sobic001G169800--Sobic001G083300 Sobic002G223900 Sobic002G223900 Sobic001G169800--Sobic002G223900 Sobic003G183700 Sobic003G183700 Sobic001G169800--Sobic003G183700 Sobic001G169800--Sobic001G105800 Sobic004G355500 Sobic004G355500 Sobic001G169800--Sobic004G355500 Sobic003G179500 Sobic003G179500 Sobic001G169800--Sobic003G179500 Sobic007G007800 Sobic007G007800 Sobic001G105800--Sobic007G007800 Sobic001G105800--Sobic002G223900 Sobic009G184200 Sobic009G184200 Sobic001G105800--Sobic009G184200 Sobic001G105800--Sobic003G444300 Sobic003G387700 Sobic003G387700 Sobic001G105800--Sobic003G387700 Sobic001G105800--Sobic001G083300 Sobic001G105800--Sobic001G456500 Sobic010G105400 Sobic010G105400 Sobic001G105800--Sobic010G105400 Sobic009G172950 Sobic009G172950 Sobic001G105800--Sobic009G172950 Sobic007G017700--Sobic003G387700 Sobic007G017700--Sobic002G289800 Sobic007G207700 Sobic007G207700 Sobic007G017700--Sobic007G207700 Sobic010G202100 Sobic010G202100 Sobic007G017700--Sobic010G202100 Sobic006G134200 Sobic006G134200 Sobic007G017700--Sobic006G134200 Sobic010G215300 Sobic010G215300 Sobic007G017700--Sobic010G215300 Sobic001G091500 Sobic001G091500 Sobic007G017700--Sobic001G091500 Sobic010G234800 Sobic010G234800 Sobic007G017700--Sobic010G234800 Sobic008G114500 Sobic008G114500 Sobic007G017700--Sobic008G114500 Sobic001G289900 Sobic001G289900 Sobic002G289800--Sobic001G289900 Sobic002G289800--Sobic007G017700 Sobic002G289800--Sobic003G316601 Sobic004G237000 Sobic004G237000 Sobic002G289800--Sobic004G237000 Sobic004G327600 Sobic004G327600 Sobic002G289800--Sobic004G327600 Sobic007G132900 Sobic007G132900 Sobic002G289800--Sobic007G132900 Sobic010G222100 Sobic010G222100 Sobic002G289800--Sobic010G222100 Sobic001G300400 Sobic001G300400 Sobic002G289800--Sobic001G300400 Sobic002G289800--Sobic006G081800 Sobic003G244000 Sobic003G244000 Sobic001G238900--Sobic003G244000 Sobic002G230800 Sobic002G230800 Sobic001G238900--Sobic002G230800 Sobic001G238900--Sobic001G105800 Sobic001G238900--Sobic002G246900 Sobic001G238900--Sobic002G223900 Sobic009G109300 Sobic009G109300 Sobic001G238900--Sobic009G109300 Sobic004G317000 Sobic004G317000 Sobic001G238900--Sobic004G317000 Sobic001G118800 Sobic001G118800 Sobic001G238900--Sobic001G118800 Sobic001G238900--Sobic001G169800 Sobic004G047100 Sobic004G047100 Sobic002G246900--Sobic004G047100 Sobic002G246900--Sobic010G105400 Sobic010G191000 Sobic010G191000 Sobic002G246900--Sobic010G191000 Sobic003G107200 Sobic003G107200 Sobic002G246900--Sobic003G107200 Sobic002G246900--Sobic001G238900 Sobic009G181500 Sobic009G181500 Sobic002G246900--Sobic009G181500 Sobic002G236700 Sobic002G236700 Sobic002G246900--Sobic002G236700 Sobic002G246900--Sobic001G169800 Sobic002G246900--Sobic002G230800 Sobic001G205000 Sobic001G205000 Sobic004G279601--Sobic001G205000 Sobic006G076400 Sobic006G076400 Sobic004G279601--Sobic006G076400 Sobic004G285900 Sobic004G285900 Sobic004G279601--Sobic004G285900 Sobic004G279601--Sobic001G078600 Sobic004G279601--Sobic006G081800 Sobic004G205300 Sobic004G205300 Sobic004G279601--Sobic004G205300 Sobic007G214700 Sobic007G214700 Sobic004G279601--Sobic007G214700 Sobic003G057100 Sobic003G057100 Sobic004G279601--Sobic003G057100 Sobic001G261549 Sobic001G261549 Sobic004G279601--Sobic001G261549
Octagon: transcription factors


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