Gene annotation
Transcriptome id Sobic.001G169800.2
Synonym Sb01g014850, CYCA3, 4
Functional annotation cyclin, putative, expressed
UniProt A0A1Z5S6F1
Pfam PF02984 PF00134
Panther DB PTHR10177 PTHR10177:SF260
NCBI CDD -
KEGG Orthology K06627; cyclin-A
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT5G43080 : Cyclin A3;1
RAP-DB (Rice) LOC_Os03g41100.1 : cyclin, putative, expressed
MaizeGDB (Corn) Zm00025a017318 , Zm00025a025174 , Zm00025a007431
Brachypodium KQK14221 , KQJ86127
Barley HORVU4Hr1G013320.2 , HORVU4Hr1G013320.1 , HORVU5Hr1G018820.8 , HORVU5Hr1G018820.9 , HORVU5Hr1G018820.2 , HORVU5Hr1G018820.3 , HORVU5Hr1G018820.4 , HORVU5Hr1G018820.5 , HORVU5Hr1G018820.6 , HORVU5Hr1G018820.7
Wheat TraesCS4A02G236700 , TraesCS4A02G236700 , TraesCS4B02G078300 , TraesCS5B02G078200 , TraesCS5A02G072000 , TraesCS4D02G076900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
2 Sobic.006G116500 expressed protein -
3 Sobic.003G444300 expressed protein K11550: SPBC25, kinetochore protein Spc25, animal type
4 Sobic.001G083300 transducin family protein, putative, expressed K02180: cell cycle arrest protein BUB3
5 Sobic.002G223900 OsFBX330 - F-box domain containing protein, expressed -
6 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
7 Sobic.001G105800 OsFBX109 - F-box domain containing protein, expressed -
8 Sobic.004G355500 RPA2A - Putative single-stranded DNA binding complex subunit 2, expressed K10739: RFA2, replication factor A2
9 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
10 Sobic.001G142000 deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed K01520: dut, dUTP pyrophosphatase
11 Sobic.010G103700 POLA2 - Putative DNA polymerase alpha complex subunit, expressed K02321: DNA polymerase alpha subunit B
12 Sobic.002G303800 expressed protein -
13 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3
14 Sobic.001G238900 OsFBX386 - F-box domain containing protein, expressed -
15 Sobic.002G246900 expressed protein -
16 Sobic.004G047100 EH domain-containing protein 1, putative, expressed K12483: EH domain-containing protein 1
17 Sobic.004G331600 MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed K02209: MCM5, DNA replication licensing factor MCM5
18 Sobic.005G144600 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
19 Sobic.003G201000 WD domain, G-beta repeat domain containing protein, expressed -
20 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7


Gene co-expression network
sample Sobic001G169800 Sobic001G169800 Sobic001G456500 Sobic001G456500 Sobic001G169800--Sobic001G456500 Sobic006G116500 Sobic006G116500 Sobic001G169800--Sobic006G116500 Sobic003G444300 Sobic003G444300 Sobic001G169800--Sobic003G444300 Sobic001G083300 Sobic001G083300 Sobic001G169800--Sobic001G083300 Sobic002G223900 Sobic002G223900 Sobic001G169800--Sobic002G223900 Sobic003G183700 Sobic003G183700 Sobic001G169800--Sobic003G183700 Sobic001G105800 Sobic001G105800 Sobic001G169800--Sobic001G105800 Sobic004G355500 Sobic004G355500 Sobic001G169800--Sobic004G355500 Sobic003G179500 Sobic003G179500 Sobic001G169800--Sobic003G179500 Sobic001G456500--Sobic006G116500 Sobic004G331600 Sobic004G331600 Sobic001G456500--Sobic004G331600 Sobic001G142000 Sobic001G142000 Sobic001G456500--Sobic001G142000 Sobic001G456500--Sobic001G083300 Sobic008G129200 Sobic008G129200 Sobic001G456500--Sobic008G129200 Sobic001G456500--Sobic002G223900 Sobic001G456500--Sobic001G169800 Sobic001G456500--Sobic003G444300 Sobic001G456500--Sobic004G355500 Sobic006G116500--Sobic001G456500 Sobic006G116500--Sobic004G355500 Sobic006G116500--Sobic001G169800 Sobic001G070300 Sobic001G070300 Sobic006G116500--Sobic001G070300 Sobic006G116500--Sobic003G179500 Sobic006G116500--Sobic008G129200 Sobic006G116500--Sobic002G223900 Sobic006G116500--Sobic004G331600 Sobic004G047100 Sobic004G047100 Sobic006G116500--Sobic004G047100 Sobic003G444300--Sobic001G456500 Sobic003G444300--Sobic001G083300 Sobic003G444300--Sobic001G169800 Sobic003G444300--Sobic001G105800 Sobic003G444300--Sobic001G142000 Sobic003G444300--Sobic004G331600 Sobic003G201000 Sobic003G201000 Sobic003G444300--Sobic003G201000 Sobic002G303800 Sobic002G303800 Sobic003G444300--Sobic002G303800 Sobic010G105400 Sobic010G105400 Sobic003G444300--Sobic010G105400 Sobic001G083300--Sobic001G456500 Sobic001G083300--Sobic002G223900 Sobic001G083300--Sobic003G444300 Sobic010G147700 Sobic010G147700 Sobic001G083300--Sobic010G147700 Sobic009G087000 Sobic009G087000 Sobic001G083300--Sobic009G087000 Sobic001G083300--Sobic003G183700 Sobic001G083300--Sobic008G129200 Sobic001G083300--Sobic001G105800 Sobic001G083300--Sobic004G331600 Sobic002G223900--Sobic001G456500 Sobic002G223900--Sobic001G083300 Sobic002G223900--Sobic001G105800 Sobic002G223900--Sobic004G331600 Sobic007G007800 Sobic007G007800 Sobic002G223900--Sobic007G007800 Sobic002G223900--Sobic008G129200 Sobic002G223900--Sobic006G116500 Sobic002G223900--Sobic003G183700 Sobic003G387700 Sobic003G387700 Sobic002G223900--Sobic003G387700 Sobic006G051000 Sobic006G051000 Sobic003G183700--Sobic006G051000 Sobic003G183700--Sobic009G087000 Sobic006G195500 Sobic006G195500 Sobic003G183700--Sobic006G195500 Sobic010G103700 Sobic010G103700 Sobic003G183700--Sobic010G103700 Sobic003G183700--Sobic003G179500 Sobic005G110535 Sobic005G110535 Sobic003G183700--Sobic005G110535 Sobic003G183700--Sobic008G129200 Sobic004G321400 Sobic004G321400 Sobic003G183700--Sobic004G321400 Sobic003G183700--Sobic010G147700 Sobic001G105800--Sobic007G007800 Sobic001G105800--Sobic002G223900 Sobic009G184200 Sobic009G184200 Sobic001G105800--Sobic009G184200 Sobic001G105800--Sobic003G444300 Sobic001G105800--Sobic003G387700 Sobic001G105800--Sobic001G083300 Sobic001G105800--Sobic001G456500 Sobic001G105800--Sobic010G105400 Sobic009G172950 Sobic009G172950 Sobic001G105800--Sobic009G172950 Sobic004G355500--Sobic006G116500 Sobic004G355500--Sobic001G456500 Sobic007G152900 Sobic007G152900 Sobic004G355500--Sobic007G152900 Sobic004G355500--Sobic010G103700 Sobic004G355500--Sobic001G169800 Sobic004G197400 Sobic004G197400 Sobic004G355500--Sobic004G197400 Sobic009G088200 Sobic009G088200 Sobic004G355500--Sobic009G088200 Sobic001G103000 Sobic001G103000 Sobic004G355500--Sobic001G103000 Sobic004G355500--Sobic008G129200 Sobic003G179500--Sobic003G183700 Sobic003G179500--Sobic010G103700 Sobic003G179500--Sobic010G105400 Sobic005G144600 Sobic005G144600 Sobic003G179500--Sobic005G144600 Sobic003G179500--Sobic010G147700 Sobic003G179500--Sobic009G087000 Sobic003G179500--Sobic005G110535 Sobic003G179500--Sobic006G116500 Sobic003G179500--Sobic004G047100
Octagon: transcription factors


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