Gene annotation
Transcriptome id Sobic.010G105400.1
Synonym Sb10g009230, EMB2656
Functional annotation chromosome condensation protein like, putative, expressed
UniProt A0A194YIC0
Pfam PF12719
Panther DB PTHR14418 PTHR14418:SF5
NCBI CDD -
KEGG Orthology K06678; YCG1, condensin complex subunit 3
Gene Ontology GO:0007076; mitotic chromosome condensation GO:0000796condensin complex


Orthologs (automatic annotation)
TAIR AT5G37630 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os06g14460.1 : chromosome condensation protein like, putative, expressed
MaizeGDB (Corn) Zm00025a050381
Brachypodium KQK18702 , KQK18701
Barley HORVU7Hr1G041540.15 , HORVU7Hr1G041540.14 , HORVU7Hr1G041540.13 , HORVU7Hr1G041540.12 , HORVU7Hr1G041540.11 , HORVU7Hr1G041540.10 , HORVU7Hr1G041540.7 , HORVU7Hr1G041540.6 , HORVU7Hr1G041540.5 , HORVU7Hr1G041540.4 , HORVU7Hr1G041540.3 , HORVU7Hr1G041540.2 , HORVU7Hr1G041540.1 , HORVU7Hr1G041540.9 , HORVU7Hr1G041540.8
Wheat TraesCS7A02G204000 , TraesCS7B02G111000 , TraesCS7D02G207100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G144600 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
2 Sobic.004G047100 EH domain-containing protein 1, putative, expressed K12483: EH domain-containing protein 1
3 Sobic.009G184200 RecF/RecN/SMC N terminal domain containing protein, expressed K06675: structural maintenance of chromosome 4
4 Sobic.005G000500 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
5 Sobic.001G398400 expressed protein -
6 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
7 Sobic.006G124400 ATP binding protein, putative, expressed -
8 Sobic.007G168900 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
9 Sobic.002G204400 kinesin motor protein-related, putative, expressed K11498: centromeric protein E
10 Sobic.003G444100 "OsCCS52B(Ortholog in rice:Su’udi et al., 2012)"(PubMedID : 31659875)@WD repeat-containing protein, putative, expressed K03364: cell division cycle 20-like protein 1, cofactor of APC complex
11 Sobic.003G387700 expressed protein -
12 Sobic.004G271300 DNA topoisomerase 2, putative, expressed K03164: DNA topoisomerase II
13 Sobic.003G260700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
14 Sobic.003G032200 IQ calmodulin-binding motif domain containing protein, expressed -
15 Sobic.001G170800 "Transport protein(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659835)@transport protein-related, putative, expressed -
16 Sobic.002G296000 HEAT repeat family protein, putative, expressed -
17 Sobic.004G257600 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
18 Sobic.002G246900 expressed protein -
19 Sobic.007G027900 chloroplast unusual positioning protein, putative, expressed -
20 Sobic.001G289900 AT hook motif domain containing protein, expressed -


Gene co-expression network
sample Sobic010G105400 Sobic010G105400 Sobic005G144600 Sobic005G144600 Sobic010G105400--Sobic005G144600 Sobic004G047100 Sobic004G047100 Sobic010G105400--Sobic004G047100 Sobic009G184200 Sobic009G184200 Sobic010G105400--Sobic009G184200 Sobic005G000500 Sobic005G000500 Sobic010G105400--Sobic005G000500 Sobic001G398400 Sobic001G398400 Sobic010G105400--Sobic001G398400 Sobic003G179500 Sobic003G179500 Sobic010G105400--Sobic003G179500 Sobic006G124400 Sobic006G124400 Sobic010G105400--Sobic006G124400 Sobic007G168900 Sobic007G168900 Sobic010G105400--Sobic007G168900 Sobic002G204400 Sobic002G204400 Sobic010G105400--Sobic002G204400 Sobic005G144600--Sobic007G168900 Sobic005G144600--Sobic010G105400 Sobic003G294500 Sobic003G294500 Sobic005G144600--Sobic003G294500 Sobic005G144600--Sobic005G000500 Sobic003G314900 Sobic003G314900 Sobic005G144600--Sobic003G314900 Sobic001G177900 Sobic001G177900 Sobic005G144600--Sobic001G177900 Sobic005G144600--Sobic004G047100 Sobic004G271300 Sobic004G271300 Sobic005G144600--Sobic004G271300 Sobic005G144600--Sobic003G179500 Sobic004G047100--Sobic010G105400 Sobic004G047100--Sobic005G144600 Sobic009G181500 Sobic009G181500 Sobic004G047100--Sobic009G181500 Sobic002G246900 Sobic002G246900 Sobic004G047100--Sobic002G246900 Sobic002G426800 Sobic002G426800 Sobic004G047100--Sobic002G426800 Sobic004G047100--Sobic003G179500 Sobic001G091500 Sobic001G091500 Sobic004G047100--Sobic001G091500 Sobic006G116500 Sobic006G116500 Sobic004G047100--Sobic006G116500 Sobic003G387700 Sobic003G387700 Sobic004G047100--Sobic003G387700 Sobic009G184200--Sobic002G204400 Sobic009G184200--Sobic010G105400 Sobic009G184200--Sobic001G398400 Sobic003G393100 Sobic003G393100 Sobic009G184200--Sobic003G393100 Sobic010G129700 Sobic010G129700 Sobic009G184200--Sobic010G129700 Sobic003G032200 Sobic003G032200 Sobic009G184200--Sobic003G032200 Sobic001G170800 Sobic001G170800 Sobic009G184200--Sobic001G170800 Sobic007G007800 Sobic007G007800 Sobic009G184200--Sobic007G007800 Sobic003G260700 Sobic003G260700 Sobic009G184200--Sobic003G260700 Sobic005G000500--Sobic007G168900 Sobic005G000500--Sobic001G170800 Sobic008G148000 Sobic008G148000 Sobic005G000500--Sobic008G148000 Sobic003G444100 Sobic003G444100 Sobic005G000500--Sobic003G444100 Sobic005G000500--Sobic003G314900 Sobic005G000500--Sobic004G271300 Sobic005G000500--Sobic005G144600 Sobic010G008900 Sobic010G008900 Sobic005G000500--Sobic010G008900 Sobic005G000500--Sobic001G177900 Sobic001G398400--Sobic003G260700 Sobic001G398400--Sobic001G170800 Sobic008G006800 Sobic008G006800 Sobic001G398400--Sobic008G006800 Sobic001G398400--Sobic009G184200 Sobic001G398400--Sobic004G271300 Sobic005G005700 Sobic005G005700 Sobic001G398400--Sobic005G005700 Sobic001G398400--Sobic010G105400 Sobic004G198100 Sobic004G198100 Sobic001G398400--Sobic004G198100 Sobic004G257600 Sobic004G257600 Sobic001G398400--Sobic004G257600 Sobic003G183700 Sobic003G183700 Sobic003G179500--Sobic003G183700 Sobic010G103700 Sobic010G103700 Sobic003G179500--Sobic010G103700 Sobic003G179500--Sobic010G105400 Sobic003G179500--Sobic005G144600 Sobic010G147700 Sobic010G147700 Sobic003G179500--Sobic010G147700 Sobic009G087000 Sobic009G087000 Sobic003G179500--Sobic009G087000 Sobic005G110535 Sobic005G110535 Sobic003G179500--Sobic005G110535 Sobic003G179500--Sobic006G116500 Sobic003G179500--Sobic004G047100 Sobic002G296000 Sobic002G296000 Sobic006G124400--Sobic002G296000 Sobic006G124400--Sobic010G105400 Sobic009G101100 Sobic009G101100 Sobic006G124400--Sobic009G101100 Sobic007G027900 Sobic007G027900 Sobic006G124400--Sobic007G027900 Sobic004G273000 Sobic004G273000 Sobic006G124400--Sobic004G273000 Sobic006G124400--Sobic005G005700 Sobic006G124400--Sobic008G006800 Sobic001G477400 Sobic001G477400 Sobic006G124400--Sobic001G477400 Sobic006G124400--Sobic001G398400 Sobic007G168900--Sobic005G000500 Sobic007G168900--Sobic005G144600 Sobic007G168900--Sobic004G271300 Sobic007G168900--Sobic001G177900 Sobic007G168900--Sobic003G314900 Sobic007G168900--Sobic003G294500 Sobic007G168900--Sobic003G260700 Sobic007G168900--Sobic010G008900 Sobic007G168900--Sobic010G147700 Sobic002G204400--Sobic009G184200 Sobic002G204400--Sobic008G148000 Sobic002G204400--Sobic003G393100 Sobic002G204400--Sobic010G105400 Sobic006G281400 Sobic006G281400 Sobic002G204400--Sobic006G281400 Sobic002G204400--Sobic005G000500 Sobic002G204400--Sobic007G027900 Sobic002G204400--Sobic001G398400 Sobic002G204400--Sobic004G271300
Octagon: transcription factors


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