Gene annotation
Transcriptome id Sobic.001G289900.1,Sobic.001G289900.2
Synonym Sb01g028400
Functional annotation AT hook motif domain containing protein, expressed
UniProt A0A1B6QLS1
Pfam PF03479
Panther DB PTHR31500 PTHR31500:SF17
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G33620 : AT hook motif DNA-binding family protein
RAP-DB (Rice) LOC_Os10g42230.1 : AT hook motif domain containing protein, expressed
MaizeGDB (Corn) Zm00025a051839 , Zm00025a003483
Brachypodium KQJ97906 , KQJ97905 , KQJ97904 , KQJ97903 , KQJ97902
Barley HORVU2Hr1G105800.5 , HORVU1Hr1G049980.19 , HORVU7Hr1G065300.4 , HORVU7Hr1G065300.3 , HORVU7Hr1G065300.2 , HORVU7Hr1G065300.1 , HORVU1Hr1G049980.9 , HORVU1Hr1G049980.8 , HORVU1Hr1G049980.1 , HORVU1Hr1G049980.3 , HORVU1Hr1G049980.2 , HORVU1Hr1G049980.5 , HORVU1Hr1G049980.4 , HORVU1Hr1G049980.7 , HORVU1Hr1G049980.6 , HORVU2Hr1G105800.4 , HORVU2Hr1G105800.6 , HORVU2Hr1G105800.1 , HORVU2Hr1G105800.2 , HORVU2Hr1G105800.3 , HORVU2Hr1G105800.8 , HORVU2Hr1G105800.9 , HORVU7Hr1G012410.1 , HORVU7Hr1G079290.1 , HORVU2Hr1G105800.12 , HORVU1Hr1G049980.18 , HORVU5Hr1G114080.1 , HORVU2Hr1G105800.10 , HORVU5Hr1G114080.2 , HORVU5Hr1G114120.1 , HORVU2Hr1G105800.14 , HORVU2Hr1G105800.15 , HORVU5Hr1G114120.2 , HORVU2Hr1G105800.13 , HORVU2Hr1G105800.11 , HORVU1Hr1G049980.15 , HORVU1Hr1G049980.14 , HORVU1Hr1G049980.17 , HORVU1Hr1G049980.16 , HORVU1Hr1G049980.11 , HORVU1Hr1G049980.10 , HORVU1Hr1G049980.12
Wheat TraesCS1D02G194900 , TraesCS1A02G190900 , TraesCS1B02G206100 , TraesCS1B02G206100 , TraesCS1D02G194900
Populus -


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cDNA sequences
Sobic.001G289900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3
2 Sobic.002G289800 HMG1/2, putative, expressed -
3 Sobic.007G132900 linker histone H1 and H5 family protein, expressed -
4 Sobic.003G387700 expressed protein -
5 Sobic.004G047100 EH domain-containing protein 1, putative, expressed K12483: EH domain-containing protein 1
6 Sobic.001G398400 expressed protein -
7 Sobic.004G273000 MYB family transcription factor, putative, expressed -
8 Sobic.001G091500 expressed protein -
9 Sobic.002G426800 zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.003G102000 expressed protein -
11 Sobic.001G300400 expansin precursor, putative, expressed -
12 Sobic.004G198100 expressed protein -
13 Sobic.003G260700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
14 Sobic.009G184200 RecF/RecN/SMC N terminal domain containing protein, expressed K06675: structural maintenance of chromosome 4
15 Sobic.002G246900 expressed protein -
16 Sobic.010G129700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
17 Sobic.001G477400 AUXIN SIGNALING F-BOX 2, putative, expressed -
18 Sobic.001G105800 OsFBX109 - F-box domain containing protein, expressed -
19 Sobic.004G257600 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
20 Sobic.004G063600 CYPRO4, putative, expressed -


Gene co-expression network
sample Sobic001G289900 Sobic001G289900 Sobic010G105400 Sobic010G105400 Sobic001G289900--Sobic010G105400 Sobic002G289800 Sobic002G289800 Sobic001G289900--Sobic002G289800 Sobic007G132900 Sobic007G132900 Sobic001G289900--Sobic007G132900 Sobic003G387700 Sobic003G387700 Sobic001G289900--Sobic003G387700 Sobic004G047100 Sobic004G047100 Sobic001G289900--Sobic004G047100 Sobic001G398400 Sobic001G398400 Sobic001G289900--Sobic001G398400 Sobic004G273000 Sobic004G273000 Sobic001G289900--Sobic004G273000 Sobic001G091500 Sobic001G091500 Sobic001G289900--Sobic001G091500 Sobic002G426800 Sobic002G426800 Sobic001G289900--Sobic002G426800 Sobic005G144600 Sobic005G144600 Sobic010G105400--Sobic005G144600 Sobic010G105400--Sobic004G047100 Sobic009G184200 Sobic009G184200 Sobic010G105400--Sobic009G184200 Sobic005G000500 Sobic005G000500 Sobic010G105400--Sobic005G000500 Sobic010G105400--Sobic001G398400 Sobic003G179500 Sobic003G179500 Sobic010G105400--Sobic003G179500 Sobic006G124400 Sobic006G124400 Sobic010G105400--Sobic006G124400 Sobic007G168900 Sobic007G168900 Sobic010G105400--Sobic007G168900 Sobic002G204400 Sobic002G204400 Sobic010G105400--Sobic002G204400 Sobic002G289800--Sobic001G289900 Sobic007G017700 Sobic007G017700 Sobic002G289800--Sobic007G017700 Sobic003G316601 Sobic003G316601 Sobic002G289800--Sobic003G316601 Sobic004G237000 Sobic004G237000 Sobic002G289800--Sobic004G237000 Sobic004G327600 Sobic004G327600 Sobic002G289800--Sobic004G327600 Sobic002G289800--Sobic007G132900 Sobic010G222100 Sobic010G222100 Sobic002G289800--Sobic010G222100 Sobic001G300400 Sobic001G300400 Sobic002G289800--Sobic001G300400 Sobic006G081800 Sobic006G081800 Sobic002G289800--Sobic006G081800 Sobic007G132900--Sobic001G289900 Sobic006G065400 Sobic006G065400 Sobic007G132900--Sobic006G065400 Sobic007G132900--Sobic002G289800 Sobic003G102000 Sobic003G102000 Sobic007G132900--Sobic003G102000 Sobic009G120700 Sobic009G120700 Sobic007G132900--Sobic009G120700 Sobic010G119300 Sobic010G119300 Sobic007G132900--Sobic010G119300 Sobic003G260700 Sobic003G260700 Sobic007G132900--Sobic003G260700 Sobic004G198100 Sobic004G198100 Sobic007G132900--Sobic004G198100 Sobic002G353200 Sobic002G353200 Sobic007G132900--Sobic002G353200 Sobic004G257600 Sobic004G257600 Sobic003G387700--Sobic004G257600 Sobic006G134200 Sobic006G134200 Sobic003G387700--Sobic006G134200 Sobic003G387700--Sobic010G105400 Sobic003G387700--Sobic001G091500 Sobic001G105800 Sobic001G105800 Sobic003G387700--Sobic001G105800 Sobic003G387700--Sobic010G119300 Sobic003G387700--Sobic001G398400 Sobic003G328500 Sobic003G328500 Sobic003G387700--Sobic003G328500 Sobic007G100600 Sobic007G100600 Sobic003G387700--Sobic007G100600 Sobic004G047100--Sobic010G105400 Sobic004G047100--Sobic005G144600 Sobic009G181500 Sobic009G181500 Sobic004G047100--Sobic009G181500 Sobic002G246900 Sobic002G246900 Sobic004G047100--Sobic002G246900 Sobic004G047100--Sobic002G426800 Sobic004G047100--Sobic003G179500 Sobic004G047100--Sobic001G091500 Sobic006G116500 Sobic006G116500 Sobic004G047100--Sobic006G116500 Sobic004G047100--Sobic003G387700 Sobic001G398400--Sobic003G260700 Sobic001G170800 Sobic001G170800 Sobic001G398400--Sobic001G170800 Sobic008G006800 Sobic008G006800 Sobic001G398400--Sobic008G006800 Sobic001G398400--Sobic009G184200 Sobic004G271300 Sobic004G271300 Sobic001G398400--Sobic004G271300 Sobic005G005700 Sobic005G005700 Sobic001G398400--Sobic005G005700 Sobic001G398400--Sobic010G105400 Sobic001G398400--Sobic004G198100 Sobic001G398400--Sobic004G257600 Sobic004G273000--Sobic006G124400 Sobic001G477400 Sobic001G477400 Sobic004G273000--Sobic001G477400 Sobic002G392500 Sobic002G392500 Sobic004G273000--Sobic002G392500 Sobic007G027900 Sobic007G027900 Sobic004G273000--Sobic007G027900 Sobic004G273000--Sobic010G105400 Sobic002G296000 Sobic002G296000 Sobic004G273000--Sobic002G296000 Sobic004G273000--Sobic001G289900 Sobic010G261700 Sobic010G261700 Sobic004G273000--Sobic010G261700 Sobic004G273000--Sobic005G005700 Sobic001G091500--Sobic002G426800 Sobic001G091500--Sobic003G387700 Sobic001G091500--Sobic009G120700 Sobic001G091500--Sobic003G260700 Sobic001G091500--Sobic004G047100 Sobic002G222500 Sobic002G222500 Sobic001G091500--Sobic002G222500 Sobic004G339500 Sobic004G339500 Sobic001G091500--Sobic004G339500 Sobic001G091500--Sobic010G119300 Sobic001G091500--Sobic004G198100 Sobic002G426800--Sobic009G181500 Sobic002G426800--Sobic001G091500 Sobic002G426800--Sobic005G144600 Sobic002G426800--Sobic004G047100 Sobic002G426800--Sobic003G260700 Sobic001G078600 Sobic001G078600 Sobic002G426800--Sobic001G078600 Sobic003G314900 Sobic003G314900 Sobic002G426800--Sobic003G314900 Sobic003G444100 Sobic003G444100 Sobic002G426800--Sobic003G444100 Sobic002G426800--Sobic010G105400
Octagon: transcription factors


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