Gene annotation
Transcriptome id Sobic.002G426800.1
Synonym Sb02g043730
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5X6D4
Pfam PF00097
Panther DB PTHR23328
NCBI CDD KOG0823; Predicted E3 ubiquitin ligase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G27330 : zinc finger (C3HC4-type RING finger) family protein
RAP-DB (Rice) LOC_Os12g16690.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a015494 , Zm00025a049236
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G181500 Up-reguralion under heat(PubMedID : 24916767)@cyclin, putative, expressed -
2 Sobic.001G091500 expressed protein -
3 Sobic.005G144600 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
4 Sobic.004G047100 EH domain-containing protein 1, putative, expressed K12483: EH domain-containing protein 1
5 Sobic.003G260700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
6 Sobic.001G078600 CAMK_CAMK_like_Aur_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
7 Sobic.003G314900 flap endonuclease, putative, expressed K10746: exonuclease 1
8 Sobic.003G444100 "OsCCS52B(Ortholog in rice:Su’udi et al., 2012)"(PubMedID : 31659875)@WD repeat-containing protein, putative, expressed K03364: cell division cycle 20-like protein 1, cofactor of APC complex
9 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3
10 Sobic.003G328500 Expressed in younger stem(PubMedID : 28649278)@cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
11 Sobic.005G000500 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
12 Sobic.003G294500 dynamin family protein, putative, expressed -
13 Sobic.001G170800 "Transport protein(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659835)@transport protein-related, putative, expressed -
14 Sobic.004G339500 kinesin motor domain containing protein, putative, expressed -
15 Sobic.006G102900 expressed protein -
16 Sobic.001G177900 Kinesin motor domain domain containing protein, expressed K10400: kinesin family member 15
17 Sobic.003G102000 expressed protein -
18 Sobic.004G257600 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
19 Sobic.007G063100 kinesin-like protein, identical, putative, expressed -
20 Sobic.007G168900 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11


Gene co-expression network
sample Sobic002G426800 Sobic002G426800 Sobic009G181500 Sobic009G181500 Sobic002G426800--Sobic009G181500 Sobic001G091500 Sobic001G091500 Sobic002G426800--Sobic001G091500 Sobic005G144600 Sobic005G144600 Sobic002G426800--Sobic005G144600 Sobic004G047100 Sobic004G047100 Sobic002G426800--Sobic004G047100 Sobic003G260700 Sobic003G260700 Sobic002G426800--Sobic003G260700 Sobic001G078600 Sobic001G078600 Sobic002G426800--Sobic001G078600 Sobic003G314900 Sobic003G314900 Sobic002G426800--Sobic003G314900 Sobic003G444100 Sobic003G444100 Sobic002G426800--Sobic003G444100 Sobic010G105400 Sobic010G105400 Sobic002G426800--Sobic010G105400 Sobic009G181500--Sobic002G426800 Sobic009G181500--Sobic004G047100 Sobic010G051100 Sobic010G051100 Sobic009G181500--Sobic010G051100 Sobic006G035600 Sobic006G035600 Sobic009G181500--Sobic006G035600 Sobic009G181500--Sobic005G144600 Sobic010G274000 Sobic010G274000 Sobic009G181500--Sobic010G274000 Sobic006G102900 Sobic006G102900 Sobic009G181500--Sobic006G102900 Sobic001G070300 Sobic001G070300 Sobic009G181500--Sobic001G070300 Sobic003G294500 Sobic003G294500 Sobic009G181500--Sobic003G294500 Sobic001G091500--Sobic002G426800 Sobic003G387700 Sobic003G387700 Sobic001G091500--Sobic003G387700 Sobic009G120700 Sobic009G120700 Sobic001G091500--Sobic009G120700 Sobic001G091500--Sobic003G260700 Sobic001G091500--Sobic004G047100 Sobic002G222500 Sobic002G222500 Sobic001G091500--Sobic002G222500 Sobic004G339500 Sobic004G339500 Sobic001G091500--Sobic004G339500 Sobic010G119300 Sobic010G119300 Sobic001G091500--Sobic010G119300 Sobic004G198100 Sobic004G198100 Sobic001G091500--Sobic004G198100 Sobic007G168900 Sobic007G168900 Sobic005G144600--Sobic007G168900 Sobic005G144600--Sobic010G105400 Sobic005G144600--Sobic003G294500 Sobic005G000500 Sobic005G000500 Sobic005G144600--Sobic005G000500 Sobic005G144600--Sobic003G314900 Sobic001G177900 Sobic001G177900 Sobic005G144600--Sobic001G177900 Sobic005G144600--Sobic004G047100 Sobic004G271300 Sobic004G271300 Sobic005G144600--Sobic004G271300 Sobic003G179500 Sobic003G179500 Sobic005G144600--Sobic003G179500 Sobic004G047100--Sobic010G105400 Sobic004G047100--Sobic005G144600 Sobic004G047100--Sobic009G181500 Sobic002G246900 Sobic002G246900 Sobic004G047100--Sobic002G246900 Sobic004G047100--Sobic002G426800 Sobic004G047100--Sobic003G179500 Sobic004G047100--Sobic001G091500 Sobic006G116500 Sobic006G116500 Sobic004G047100--Sobic006G116500 Sobic004G047100--Sobic003G387700 Sobic001G170800 Sobic001G170800 Sobic003G260700--Sobic001G170800 Sobic004G257600 Sobic004G257600 Sobic003G260700--Sobic004G257600 Sobic003G260700--Sobic004G339500 Sobic001G398400 Sobic001G398400 Sobic003G260700--Sobic001G398400 Sobic003G260700--Sobic004G198100 Sobic003G260700--Sobic004G271300 Sobic008G006800 Sobic008G006800 Sobic003G260700--Sobic008G006800 Sobic003G260700--Sobic001G177900 Sobic002G313000 Sobic002G313000 Sobic003G260700--Sobic002G313000 Sobic001G078600--Sobic006G102900 Sobic001G078600--Sobic002G426800 Sobic001G078600--Sobic010G274000 Sobic001G078600--Sobic005G144600 Sobic004G197400 Sobic004G197400 Sobic001G078600--Sobic004G197400 Sobic004G285900 Sobic004G285900 Sobic001G078600--Sobic004G285900 Sobic001G078600--Sobic006G116500 Sobic001G528600 Sobic001G528600 Sobic001G078600--Sobic001G528600 Sobic007G154500 Sobic007G154500 Sobic001G078600--Sobic007G154500 Sobic003G314900--Sobic005G000500 Sobic003G314900--Sobic007G168900 Sobic003G314900--Sobic001G177900 Sobic010G008900 Sobic010G008900 Sobic003G314900--Sobic010G008900 Sobic003G314900--Sobic005G144600 Sobic003G314900--Sobic003G294500 Sobic003G314900--Sobic003G260700 Sobic003G314900--Sobic001G170800 Sobic003G314900--Sobic004G271300 Sobic003G444100--Sobic005G000500 Sobic003G444100--Sobic001G170800 Sobic003G444100--Sobic003G260700 Sobic003G444100--Sobic007G168900 Sobic003G444100--Sobic001G177900 Sobic003G444100--Sobic001G398400 Sobic003G444100--Sobic004G257600 Sobic003G444100--Sobic003G314900 Sobic003G444100--Sobic010G105400 Sobic010G105400--Sobic005G144600 Sobic010G105400--Sobic004G047100 Sobic009G184200 Sobic009G184200 Sobic010G105400--Sobic009G184200 Sobic010G105400--Sobic005G000500 Sobic010G105400--Sobic001G398400 Sobic010G105400--Sobic003G179500 Sobic006G124400 Sobic006G124400 Sobic010G105400--Sobic006G124400 Sobic010G105400--Sobic007G168900 Sobic002G204400 Sobic002G204400 Sobic010G105400--Sobic002G204400
Octagon: transcription factors


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