Gene annotation
Transcriptome id Sobic.003G314900.2,Sobic.003G314900.3,Sobic.003G314900.1
Synonym Sb03g036255
Functional annotation flap endonuclease, putative, expressed
UniProt A0A1W0VZW5 , A0A1W0VZV3 , A0A1W0VZU4
Pfam PF00752 PF00867
Panther DB PTHR11081 PTHR11081:SF8
NCBI CDD -
KEGG Orthology K10746; exonuclease 1
Gene Ontology GO:0006281; DNA repair GO:0004518nuclease activity


Orthologs (automatic annotation)
TAIR AT1G29630 : 5\'-3\' exonuclease family protein
RAP-DB (Rice) LOC_Os01g56940.1 : flap endonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a049891 , Zm00025a027327
Brachypodium KQK10037 , PNT72968
Barley HORVU3Hr1G076270.40 , HORVU3Hr1G076270.41 , HORVU3Hr1G076270.42 , HORVU3Hr1G076270.19 , HORVU3Hr1G076270.18 , HORVU3Hr1G076270.17 , HORVU3Hr1G076270.16 , HORVU3Hr1G076270.15 , HORVU3Hr1G076270.14 , HORVU3Hr1G076270.13 , HORVU3Hr1G076270.12 , HORVU3Hr1G076270.11 , HORVU3Hr1G076270.10 , HORVU3Hr1G076270.7 , HORVU3Hr1G076270.6 , HORVU3Hr1G076270.5 , HORVU3Hr1G076270.4 , HORVU3Hr1G076270.3 , HORVU3Hr1G076270.2 , HORVU3Hr1G076270.1 , HORVU3Hr1G076270.9 , HORVU3Hr1G076270.8 , HORVU3Hr1G076270.31 , HORVU3Hr1G076270.30 , HORVU3Hr1G076270.33 , HORVU3Hr1G076270.32 , HORVU3Hr1G076270.35 , HORVU3Hr1G076270.34 , HORVU3Hr1G076270.37 , HORVU3Hr1G076270.36 , HORVU3Hr1G076270.39 , HORVU3Hr1G076270.38 , HORVU3Hr1G076270.26 , HORVU3Hr1G076270.27 , HORVU3Hr1G076270.24 , HORVU3Hr1G076270.25 , HORVU3Hr1G076270.22 , HORVU3Hr1G076270.23 , HORVU3Hr1G076270.20 , HORVU3Hr1G076270.21 , HORVU3Hr1G076270.28 , HORVU3Hr1G076270.29
Wheat TraesCS3D02G311400 , TraesCS3A02G319700 , TraesCS3B02G346600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G000500 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
2 Sobic.007G168900 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
3 Sobic.001G177900 Kinesin motor domain domain containing protein, expressed K10400: kinesin family member 15
4 Sobic.010G008900 kinesin motor domain containing protein, expressed K11498: centromeric protein E
5 Sobic.005G144600 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
6 Sobic.003G294500 dynamin family protein, putative, expressed -
7 Sobic.003G260700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
8 Sobic.001G170800 "Transport protein(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659835)@transport protein-related, putative, expressed -
9 Sobic.004G271300 DNA topoisomerase 2, putative, expressed K03164: DNA topoisomerase II
10 Sobic.003G444100 "OsCCS52B(Ortholog in rice:Su’udi et al., 2012)"(PubMedID : 31659875)@WD repeat-containing protein, putative, expressed K03364: cell division cycle 20-like protein 1, cofactor of APC complex
11 Sobic.004G257600 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
12 Sobic.008G148000 kinesin motor domain containing protein, putative, expressed K10400: kinesin family member 15
13 Sobic.001G416000 kinesin-related protein, putative, expressed K10398: KIF11, kinesin family member 11
14 Sobic.002G426800 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.002G255500 expressed protein -
16 Sobic.001G029800 expressed protein -
17 Sobic.006G144300 expressed protein -
18 Sobic.004G339500 kinesin motor domain containing protein, putative, expressed -
19 Sobic.001G398400 expressed protein -
20 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4


Gene co-expression network
sample Sobic003G314900 Sobic003G314900 Sobic005G000500 Sobic005G000500 Sobic003G314900--Sobic005G000500 Sobic007G168900 Sobic007G168900 Sobic003G314900--Sobic007G168900 Sobic001G177900 Sobic001G177900 Sobic003G314900--Sobic001G177900 Sobic010G008900 Sobic010G008900 Sobic003G314900--Sobic010G008900 Sobic005G144600 Sobic005G144600 Sobic003G314900--Sobic005G144600 Sobic003G294500 Sobic003G294500 Sobic003G314900--Sobic003G294500 Sobic003G260700 Sobic003G260700 Sobic003G314900--Sobic003G260700 Sobic001G170800 Sobic001G170800 Sobic003G314900--Sobic001G170800 Sobic004G271300 Sobic004G271300 Sobic003G314900--Sobic004G271300 Sobic005G000500--Sobic007G168900 Sobic005G000500--Sobic001G170800 Sobic008G148000 Sobic008G148000 Sobic005G000500--Sobic008G148000 Sobic003G444100 Sobic003G444100 Sobic005G000500--Sobic003G444100 Sobic005G000500--Sobic003G314900 Sobic005G000500--Sobic004G271300 Sobic005G000500--Sobic005G144600 Sobic005G000500--Sobic010G008900 Sobic005G000500--Sobic001G177900 Sobic007G168900--Sobic005G000500 Sobic007G168900--Sobic005G144600 Sobic007G168900--Sobic004G271300 Sobic007G168900--Sobic001G177900 Sobic007G168900--Sobic003G314900 Sobic007G168900--Sobic003G294500 Sobic007G168900--Sobic003G260700 Sobic007G168900--Sobic010G008900 Sobic010G147700 Sobic010G147700 Sobic007G168900--Sobic010G147700 Sobic001G177900--Sobic007G168900 Sobic001G177900--Sobic003G314900 Sobic001G177900--Sobic005G000500 Sobic001G177900--Sobic003G260700 Sobic001G177900--Sobic001G170800 Sobic001G177900--Sobic010G008900 Sobic004G339500 Sobic004G339500 Sobic001G177900--Sobic004G339500 Sobic001G177900--Sobic005G144600 Sobic001G177900--Sobic003G294500 Sobic010G008900--Sobic005G000500 Sobic010G008900--Sobic003G314900 Sobic010G008900--Sobic001G170800 Sobic010G008900--Sobic007G168900 Sobic001G029800 Sobic001G029800 Sobic010G008900--Sobic001G029800 Sobic010G008900--Sobic001G177900 Sobic010G008900--Sobic003G294500 Sobic010G008900--Sobic004G271300 Sobic010G008900--Sobic008G148000 Sobic005G144600--Sobic007G168900 Sobic010G105400 Sobic010G105400 Sobic005G144600--Sobic010G105400 Sobic005G144600--Sobic003G294500 Sobic005G144600--Sobic005G000500 Sobic005G144600--Sobic003G314900 Sobic005G144600--Sobic001G177900 Sobic004G047100 Sobic004G047100 Sobic005G144600--Sobic004G047100 Sobic005G144600--Sobic004G271300 Sobic003G179500 Sobic003G179500 Sobic005G144600--Sobic003G179500 Sobic003G294500--Sobic005G144600 Sobic003G294500--Sobic007G168900 Sobic003G294500--Sobic003G314900 Sobic003G294500--Sobic001G177900 Sobic003G294500--Sobic005G000500 Sobic006G144300 Sobic006G144300 Sobic003G294500--Sobic006G144300 Sobic003G294500--Sobic010G008900 Sobic003G294500--Sobic001G029800 Sobic003G294500--Sobic010G147700 Sobic003G260700--Sobic001G170800 Sobic004G257600 Sobic004G257600 Sobic003G260700--Sobic004G257600 Sobic003G260700--Sobic004G339500 Sobic001G398400 Sobic001G398400 Sobic003G260700--Sobic001G398400 Sobic004G198100 Sobic004G198100 Sobic003G260700--Sobic004G198100 Sobic003G260700--Sobic004G271300 Sobic008G006800 Sobic008G006800 Sobic003G260700--Sobic008G006800 Sobic003G260700--Sobic001G177900 Sobic002G313000 Sobic002G313000 Sobic003G260700--Sobic002G313000 Sobic001G170800--Sobic005G000500 Sobic001G170800--Sobic003G260700 Sobic001G170800--Sobic003G444100 Sobic001G170800--Sobic001G398400 Sobic001G170800--Sobic004G271300 Sobic001G170800--Sobic008G148000 Sobic001G170800--Sobic010G008900 Sobic001G170800--Sobic001G177900 Sobic001G170800--Sobic004G339500 Sobic004G271300--Sobic007G168900 Sobic004G271300--Sobic005G000500 Sobic004G271300--Sobic003G260700 Sobic004G271300--Sobic001G170800 Sobic005G005700 Sobic005G005700 Sobic004G271300--Sobic005G005700 Sobic004G271300--Sobic001G398400 Sobic004G271300--Sobic008G006800 Sobic004G271300--Sobic001G177900 Sobic004G271300--Sobic005G144600
Octagon: transcription factors


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