Gene annotation
Transcriptome id Sobic.004G271300.1
Synonym ATTOPII, TOPII, Sb04g030880
Functional annotation DNA topoisomerase 2, putative, expressed
UniProt C5Y0E7
Pfam PF01751 PF02518 PF00204 PF16898 PF00521
Panther DB PTHR10169 PTHR10169:SF38
NCBI CDD -
KEGG Orthology K03164; DNA topoisomerase II
Gene Ontology GO:0006265; DNA topological change GO:0005524ATP binding GO:0003918DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G23890 : topoisomerase II
RAP-DB (Rice) LOC_Os02g47150.1 : DNA topoisomerase 2, putative, expressed
MaizeGDB (Corn) Zm00025a032685 , Zm00025a021661 , Zm00025a032406
Brachypodium KQK00888 , KQK00887
Barley HORVU6Hr1G067930.7 , HORVU6Hr1G067930.13 , HORVU6Hr1G067930.12 , HORVU6Hr1G067930.11 , HORVU6Hr1G067930.10 , HORVU6Hr1G067930.15 , HORVU6Hr1G067930.14 , HORVU6Hr1G067930.9 , HORVU6Hr1G067930.8 , HORVU6Hr1G067930.1 , HORVU6Hr1G067930.6 , HORVU6Hr1G067930.5 , HORVU6Hr1G067930.3 , HORVU6Hr1G067930.2 , HORVU6Hr1G067930.4
Wheat TraesCS1B02G271100 , TraesCS5B02G062600 , TraesCS6B02G295700 , TraesCS6B02G295700 , TraesCS5D02G064800 , TraesCS1A02G260500 , TraesCS1A02G260500 , TraesCS1D02G260500 , TraesCS6D02G246300 , TraesCS6D02G246300 , TraesCS6A02G268600
Populus PNT19840 , PNT19841 , PNT19842


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G168900 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
2 Sobic.005G000500 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
3 Sobic.003G260700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
4 Sobic.001G170800 "Transport protein(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659835)@transport protein-related, putative, expressed -
5 Sobic.005G005700 inactive receptor kinase At2g26730 precursor, putative, expressed -
6 Sobic.001G398400 expressed protein -
7 Sobic.008G006800 inactive receptor kinase At2g26730 precursor, putative, expressed -
8 Sobic.001G177900 Kinesin motor domain domain containing protein, expressed K10400: kinesin family member 15
9 Sobic.005G144600 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
10 Sobic.003G314900 flap endonuclease, putative, expressed K10746: exonuclease 1
11 Sobic.010G008900 kinesin motor domain containing protein, expressed K11498: centromeric protein E
12 Sobic.008G148000 kinesin motor domain containing protein, putative, expressed K10400: kinesin family member 15
13 Sobic.004G198100 expressed protein -
14 Sobic.007G027900 chloroplast unusual positioning protein, putative, expressed -
15 Sobic.002G296000 HEAT repeat family protein, putative, expressed -
16 Sobic.004G339500 kinesin motor domain containing protein, putative, expressed -
17 Sobic.003G444100 "OsCCS52B(Ortholog in rice:Su’udi et al., 2012)"(PubMedID : 31659875)@WD repeat-containing protein, putative, expressed K03364: cell division cycle 20-like protein 1, cofactor of APC complex
18 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3
19 Sobic.004G257600 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
20 Sobic.010G017400 DLT(Ortholog in rice:Tong et al. (2012))(PubMedID : 31659927)@DELLA protein SLR1, putative, expressed -


Gene co-expression network
sample Sobic004G271300 Sobic004G271300 Sobic007G168900 Sobic007G168900 Sobic004G271300--Sobic007G168900 Sobic005G000500 Sobic005G000500 Sobic004G271300--Sobic005G000500 Sobic003G260700 Sobic003G260700 Sobic004G271300--Sobic003G260700 Sobic001G170800 Sobic001G170800 Sobic004G271300--Sobic001G170800 Sobic005G005700 Sobic005G005700 Sobic004G271300--Sobic005G005700 Sobic001G398400 Sobic001G398400 Sobic004G271300--Sobic001G398400 Sobic008G006800 Sobic008G006800 Sobic004G271300--Sobic008G006800 Sobic001G177900 Sobic001G177900 Sobic004G271300--Sobic001G177900 Sobic005G144600 Sobic005G144600 Sobic004G271300--Sobic005G144600 Sobic007G168900--Sobic005G000500 Sobic007G168900--Sobic005G144600 Sobic007G168900--Sobic004G271300 Sobic007G168900--Sobic001G177900 Sobic003G314900 Sobic003G314900 Sobic007G168900--Sobic003G314900 Sobic003G294500 Sobic003G294500 Sobic007G168900--Sobic003G294500 Sobic007G168900--Sobic003G260700 Sobic010G008900 Sobic010G008900 Sobic007G168900--Sobic010G008900 Sobic010G147700 Sobic010G147700 Sobic007G168900--Sobic010G147700 Sobic005G000500--Sobic007G168900 Sobic005G000500--Sobic001G170800 Sobic008G148000 Sobic008G148000 Sobic005G000500--Sobic008G148000 Sobic003G444100 Sobic003G444100 Sobic005G000500--Sobic003G444100 Sobic005G000500--Sobic003G314900 Sobic005G000500--Sobic004G271300 Sobic005G000500--Sobic005G144600 Sobic005G000500--Sobic010G008900 Sobic005G000500--Sobic001G177900 Sobic003G260700--Sobic001G170800 Sobic004G257600 Sobic004G257600 Sobic003G260700--Sobic004G257600 Sobic004G339500 Sobic004G339500 Sobic003G260700--Sobic004G339500 Sobic003G260700--Sobic001G398400 Sobic004G198100 Sobic004G198100 Sobic003G260700--Sobic004G198100 Sobic003G260700--Sobic004G271300 Sobic003G260700--Sobic008G006800 Sobic003G260700--Sobic001G177900 Sobic002G313000 Sobic002G313000 Sobic003G260700--Sobic002G313000 Sobic001G170800--Sobic005G000500 Sobic001G170800--Sobic003G260700 Sobic001G170800--Sobic003G444100 Sobic001G170800--Sobic001G398400 Sobic001G170800--Sobic004G271300 Sobic001G170800--Sobic008G148000 Sobic001G170800--Sobic010G008900 Sobic001G170800--Sobic001G177900 Sobic001G170800--Sobic004G339500 Sobic005G005700--Sobic008G006800 Sobic005G005700--Sobic004G271300 Sobic010G017400 Sobic010G017400 Sobic005G005700--Sobic010G017400 Sobic002G296000 Sobic002G296000 Sobic005G005700--Sobic002G296000 Sobic005G005700--Sobic001G398400 Sobic010G119300 Sobic010G119300 Sobic005G005700--Sobic010G119300 Sobic005G005700--Sobic003G260700 Sobic007G027900 Sobic007G027900 Sobic005G005700--Sobic007G027900 Sobic005G005700--Sobic007G168900 Sobic001G398400--Sobic003G260700 Sobic001G398400--Sobic001G170800 Sobic001G398400--Sobic008G006800 Sobic009G184200 Sobic009G184200 Sobic001G398400--Sobic009G184200 Sobic001G398400--Sobic004G271300 Sobic001G398400--Sobic005G005700 Sobic010G105400 Sobic010G105400 Sobic001G398400--Sobic010G105400 Sobic001G398400--Sobic004G198100 Sobic001G398400--Sobic004G257600 Sobic008G006800--Sobic005G005700 Sobic008G006800--Sobic010G119300 Sobic008G006800--Sobic003G260700 Sobic008G006800--Sobic001G398400 Sobic008G006800--Sobic004G339500 Sobic008G006800--Sobic010G017400 Sobic008G006800--Sobic004G271300 Sobic008G006800--Sobic002G313000 Sobic008G006800--Sobic002G296000 Sobic001G177900--Sobic007G168900 Sobic001G177900--Sobic003G314900 Sobic001G177900--Sobic005G000500 Sobic001G177900--Sobic003G260700 Sobic001G177900--Sobic001G170800 Sobic001G177900--Sobic010G008900 Sobic001G177900--Sobic004G339500 Sobic001G177900--Sobic005G144600 Sobic001G177900--Sobic003G294500 Sobic005G144600--Sobic007G168900 Sobic005G144600--Sobic010G105400 Sobic005G144600--Sobic003G294500 Sobic005G144600--Sobic005G000500 Sobic005G144600--Sobic003G314900 Sobic005G144600--Sobic001G177900 Sobic004G047100 Sobic004G047100 Sobic005G144600--Sobic004G047100 Sobic005G144600--Sobic004G271300 Sobic003G179500 Sobic003G179500 Sobic005G144600--Sobic003G179500
Octagon: transcription factors


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