Gene annotation
Transcriptome id Sobic.007G027900.2,Sobic.007G027900.1
Synonym Sb07g002450, CHUP1
Functional annotation chloroplast unusual positioning protein, putative, expressed
UniProt C5YMW5
Pfam -
Panther DB PTHR31342 PTHR31342:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G25690 : Hydroxyproline-rich glycoprotein family protein
RAP-DB (Rice) LOC_Os08g03560.1 : chloroplast unusual positioning protein, putative, expressed
MaizeGDB (Corn) Zm00025a040377
Brachypodium KQJ94943
Barley HORVU7Hr1G074330.1 , HORVU7Hr1G074330.2 , HORVU7Hr1G074330.3 , HORVU7Hr1G074330.4 , HORVU7Hr1G074330.5 , HORVU7Hr1G074330.6
Wheat TraesCS7D02G307600 , TraesCS7B02G210800 , TraesCS7A02G311200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G296000 HEAT repeat family protein, putative, expressed -
2 Sobic.005G005700 inactive receptor kinase At2g26730 precursor, putative, expressed -
3 Sobic.004G271300 DNA topoisomerase 2, putative, expressed K03164: DNA topoisomerase II
4 Sobic.009G101100 patellin protein, putative, expressed -
5 Sobic.002G204400 kinesin motor protein-related, putative, expressed K11498: centromeric protein E
6 Sobic.006G124400 ATP binding protein, putative, expressed -
7 Sobic.008G006800 inactive receptor kinase At2g26730 precursor, putative, expressed -
8 Sobic.007G168900 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
9 Sobic.001G398400 expressed protein -
10 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3
11 Sobic.001G477400 AUXIN SIGNALING F-BOX 2, putative, expressed -
12 Sobic.005G144600 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
13 Sobic.005G000500 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
14 Sobic.008G032800 heavy-metal-associated domain-containing protein, putative, expressed -
15 Sobic.009G184200 RecF/RecN/SMC N terminal domain containing protein, expressed K06675: structural maintenance of chromosome 4
16 Sobic.004G273000 MYB family transcription factor, putative, expressed -
17 Sobic.004G198100 expressed protein -
18 Sobic.003G260700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
19 Sobic.006G221800 OsFBX46 - F-box domain containing protein, expressed -
20 Sobic.006G281400 expressed protein -


Gene co-expression network
sample Sobic007G027900 Sobic007G027900 Sobic002G296000 Sobic002G296000 Sobic007G027900--Sobic002G296000 Sobic005G005700 Sobic005G005700 Sobic007G027900--Sobic005G005700 Sobic004G271300 Sobic004G271300 Sobic007G027900--Sobic004G271300 Sobic009G101100 Sobic009G101100 Sobic007G027900--Sobic009G101100 Sobic002G204400 Sobic002G204400 Sobic007G027900--Sobic002G204400 Sobic006G124400 Sobic006G124400 Sobic007G027900--Sobic006G124400 Sobic008G006800 Sobic008G006800 Sobic007G027900--Sobic008G006800 Sobic007G168900 Sobic007G168900 Sobic007G027900--Sobic007G168900 Sobic001G398400 Sobic001G398400 Sobic007G027900--Sobic001G398400 Sobic002G296000--Sobic007G027900 Sobic002G296000--Sobic006G124400 Sobic002G296000--Sobic009G101100 Sobic002G296000--Sobic007G168900 Sobic002G296000--Sobic005G005700 Sobic002G296000--Sobic008G006800 Sobic002G296000--Sobic004G271300 Sobic010G017400 Sobic010G017400 Sobic002G296000--Sobic010G017400 Sobic008G083500 Sobic008G083500 Sobic002G296000--Sobic008G083500 Sobic005G005700--Sobic008G006800 Sobic005G005700--Sobic004G271300 Sobic005G005700--Sobic010G017400 Sobic005G005700--Sobic002G296000 Sobic005G005700--Sobic001G398400 Sobic010G119300 Sobic010G119300 Sobic005G005700--Sobic010G119300 Sobic003G260700 Sobic003G260700 Sobic005G005700--Sobic003G260700 Sobic005G005700--Sobic007G027900 Sobic005G005700--Sobic007G168900 Sobic004G271300--Sobic007G168900 Sobic005G000500 Sobic005G000500 Sobic004G271300--Sobic005G000500 Sobic004G271300--Sobic003G260700 Sobic001G170800 Sobic001G170800 Sobic004G271300--Sobic001G170800 Sobic004G271300--Sobic005G005700 Sobic004G271300--Sobic001G398400 Sobic004G271300--Sobic008G006800 Sobic001G177900 Sobic001G177900 Sobic004G271300--Sobic001G177900 Sobic005G144600 Sobic005G144600 Sobic004G271300--Sobic005G144600 Sobic009G101100--Sobic002G296000 Sobic009G101100--Sobic006G124400 Sobic009G101100--Sobic007G027900 Sobic003G032200 Sobic003G032200 Sobic009G101100--Sobic003G032200 Sobic006G221300 Sobic006G221300 Sobic009G101100--Sobic006G221300 Sobic001G304800 Sobic001G304800 Sobic009G101100--Sobic001G304800 Sobic009G101100--Sobic008G083500 Sobic006G105600 Sobic006G105600 Sobic009G101100--Sobic006G105600 Sobic010G105400 Sobic010G105400 Sobic009G101100--Sobic010G105400 Sobic009G184200 Sobic009G184200 Sobic002G204400--Sobic009G184200 Sobic008G148000 Sobic008G148000 Sobic002G204400--Sobic008G148000 Sobic003G393100 Sobic003G393100 Sobic002G204400--Sobic003G393100 Sobic002G204400--Sobic010G105400 Sobic006G281400 Sobic006G281400 Sobic002G204400--Sobic006G281400 Sobic002G204400--Sobic005G000500 Sobic002G204400--Sobic007G027900 Sobic002G204400--Sobic001G398400 Sobic002G204400--Sobic004G271300 Sobic006G124400--Sobic002G296000 Sobic006G124400--Sobic010G105400 Sobic006G124400--Sobic009G101100 Sobic006G124400--Sobic007G027900 Sobic004G273000 Sobic004G273000 Sobic006G124400--Sobic004G273000 Sobic006G124400--Sobic005G005700 Sobic006G124400--Sobic008G006800 Sobic001G477400 Sobic001G477400 Sobic006G124400--Sobic001G477400 Sobic006G124400--Sobic001G398400 Sobic008G006800--Sobic005G005700 Sobic008G006800--Sobic010G119300 Sobic008G006800--Sobic003G260700 Sobic008G006800--Sobic001G398400 Sobic004G339500 Sobic004G339500 Sobic008G006800--Sobic004G339500 Sobic008G006800--Sobic010G017400 Sobic008G006800--Sobic004G271300 Sobic002G313000 Sobic002G313000 Sobic008G006800--Sobic002G313000 Sobic008G006800--Sobic002G296000 Sobic007G168900--Sobic005G000500 Sobic007G168900--Sobic005G144600 Sobic007G168900--Sobic004G271300 Sobic007G168900--Sobic001G177900 Sobic003G314900 Sobic003G314900 Sobic007G168900--Sobic003G314900 Sobic003G294500 Sobic003G294500 Sobic007G168900--Sobic003G294500 Sobic007G168900--Sobic003G260700 Sobic010G008900 Sobic010G008900 Sobic007G168900--Sobic010G008900 Sobic010G147700 Sobic010G147700 Sobic007G168900--Sobic010G147700 Sobic001G398400--Sobic003G260700 Sobic001G398400--Sobic001G170800 Sobic001G398400--Sobic008G006800 Sobic001G398400--Sobic009G184200 Sobic001G398400--Sobic004G271300 Sobic001G398400--Sobic005G005700 Sobic001G398400--Sobic010G105400 Sobic004G198100 Sobic004G198100 Sobic001G398400--Sobic004G198100 Sobic004G257600 Sobic004G257600 Sobic001G398400--Sobic004G257600
Octagon: transcription factors


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