Gene annotation
Transcriptome id Sobic.006G124400.1,Sobic.006G124400.2
Synonym Sb06g020470
Functional annotation ATP binding protein, putative, expressed
UniProt A0A1B6PLP0
Pfam PF13177
Panther DB PTHR11669 PTHR11669:SF3
NCBI CDD KOG0989; Replication factor C, subunit RFC4
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G24790 : AAA-type ATPase family protein
RAP-DB (Rice) LOC_Os12g19180.1 : ATP binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a056324 , Zm00025a010967
Brachypodium KQJ83208 , PNT61316 , PNT61315
Barley HORVU2Hr1G083560.18 , HORVU2Hr1G083560.19 , HORVU2Hr1G083560.14 , HORVU2Hr1G083560.15 , HORVU2Hr1G083560.16 , HORVU2Hr1G083560.17 , HORVU2Hr1G083560.10 , HORVU2Hr1G083560.11 , HORVU2Hr1G083560.12 , HORVU2Hr1G083560.13 , HORVU2Hr1G083560.22 , HORVU2Hr1G083560.21 , HORVU2Hr1G083560.20 , HORVU2Hr1G083560.23 , HORVU2Hr1G083560.6 , HORVU2Hr1G083560.7 , HORVU2Hr1G083560.4 , HORVU2Hr1G083560.5 , HORVU2Hr1G083560.2 , HORVU2Hr1G083560.3 , HORVU2Hr1G083560.1 , HORVU2Hr1G083560.8 , HORVU2Hr1G083560.9
Wheat TraesCS2B02G360100 , TraesCS2A02G322600 , TraesCS2A02G322600 , TraesCS2A02G322600 , TraesCS2D02G340400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G296000 HEAT repeat family protein, putative, expressed -
2 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3
3 Sobic.009G101100 patellin protein, putative, expressed -
4 Sobic.007G027900 chloroplast unusual positioning protein, putative, expressed -
5 Sobic.004G273000 MYB family transcription factor, putative, expressed -
6 Sobic.005G005700 inactive receptor kinase At2g26730 precursor, putative, expressed -
7 Sobic.008G006800 inactive receptor kinase At2g26730 precursor, putative, expressed -
8 Sobic.001G477400 AUXIN SIGNALING F-BOX 2, putative, expressed -
9 Sobic.001G398400 expressed protein -
10 Sobic.006G105600 "domain confirmed by Pfam database, expression is supported by NCBI EST database, expressed in leaf, stem and root, expression induced by IAA treatment"(PubMedID : 20528920)@multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
11 Sobic.001G054700 seed specific protein Bn15D14A, putative, expressed -
12 Sobic.005G144600 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
13 Sobic.001G496400 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
14 Sobic.010G017400 DLT(Ortholog in rice:Tong et al. (2012))(PubMedID : 31659927)@DELLA protein SLR1, putative, expressed -
15 Sobic.007G168900 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
16 Sobic.004G271300 DNA topoisomerase 2, putative, expressed K03164: DNA topoisomerase II
17 Sobic.003G387700 expressed protein -
18 Sobic.002G230800 expressed protein -
19 Sobic.005G000500 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
20 Sobic.006G191900 ZR1 protein, putative, expressed -


Gene co-expression network
sample Sobic006G124400 Sobic006G124400 Sobic002G296000 Sobic002G296000 Sobic006G124400--Sobic002G296000 Sobic010G105400 Sobic010G105400 Sobic006G124400--Sobic010G105400 Sobic009G101100 Sobic009G101100 Sobic006G124400--Sobic009G101100 Sobic007G027900 Sobic007G027900 Sobic006G124400--Sobic007G027900 Sobic004G273000 Sobic004G273000 Sobic006G124400--Sobic004G273000 Sobic005G005700 Sobic005G005700 Sobic006G124400--Sobic005G005700 Sobic008G006800 Sobic008G006800 Sobic006G124400--Sobic008G006800 Sobic001G477400 Sobic001G477400 Sobic006G124400--Sobic001G477400 Sobic001G398400 Sobic001G398400 Sobic006G124400--Sobic001G398400 Sobic002G296000--Sobic007G027900 Sobic002G296000--Sobic006G124400 Sobic002G296000--Sobic009G101100 Sobic007G168900 Sobic007G168900 Sobic002G296000--Sobic007G168900 Sobic002G296000--Sobic005G005700 Sobic002G296000--Sobic008G006800 Sobic004G271300 Sobic004G271300 Sobic002G296000--Sobic004G271300 Sobic010G017400 Sobic010G017400 Sobic002G296000--Sobic010G017400 Sobic008G083500 Sobic008G083500 Sobic002G296000--Sobic008G083500 Sobic005G144600 Sobic005G144600 Sobic010G105400--Sobic005G144600 Sobic004G047100 Sobic004G047100 Sobic010G105400--Sobic004G047100 Sobic009G184200 Sobic009G184200 Sobic010G105400--Sobic009G184200 Sobic005G000500 Sobic005G000500 Sobic010G105400--Sobic005G000500 Sobic010G105400--Sobic001G398400 Sobic003G179500 Sobic003G179500 Sobic010G105400--Sobic003G179500 Sobic010G105400--Sobic006G124400 Sobic010G105400--Sobic007G168900 Sobic002G204400 Sobic002G204400 Sobic010G105400--Sobic002G204400 Sobic009G101100--Sobic002G296000 Sobic009G101100--Sobic006G124400 Sobic009G101100--Sobic007G027900 Sobic003G032200 Sobic003G032200 Sobic009G101100--Sobic003G032200 Sobic006G221300 Sobic006G221300 Sobic009G101100--Sobic006G221300 Sobic001G304800 Sobic001G304800 Sobic009G101100--Sobic001G304800 Sobic009G101100--Sobic008G083500 Sobic006G105600 Sobic006G105600 Sobic009G101100--Sobic006G105600 Sobic009G101100--Sobic010G105400 Sobic007G027900--Sobic002G296000 Sobic007G027900--Sobic005G005700 Sobic007G027900--Sobic004G271300 Sobic007G027900--Sobic009G101100 Sobic007G027900--Sobic002G204400 Sobic007G027900--Sobic006G124400 Sobic007G027900--Sobic008G006800 Sobic007G027900--Sobic007G168900 Sobic007G027900--Sobic001G398400 Sobic004G273000--Sobic006G124400 Sobic004G273000--Sobic001G477400 Sobic002G392500 Sobic002G392500 Sobic004G273000--Sobic002G392500 Sobic004G273000--Sobic007G027900 Sobic004G273000--Sobic010G105400 Sobic004G273000--Sobic002G296000 Sobic001G289900 Sobic001G289900 Sobic004G273000--Sobic001G289900 Sobic010G261700 Sobic010G261700 Sobic004G273000--Sobic010G261700 Sobic004G273000--Sobic005G005700 Sobic005G005700--Sobic008G006800 Sobic005G005700--Sobic004G271300 Sobic005G005700--Sobic010G017400 Sobic005G005700--Sobic002G296000 Sobic005G005700--Sobic001G398400 Sobic010G119300 Sobic010G119300 Sobic005G005700--Sobic010G119300 Sobic003G260700 Sobic003G260700 Sobic005G005700--Sobic003G260700 Sobic005G005700--Sobic007G027900 Sobic005G005700--Sobic007G168900 Sobic008G006800--Sobic005G005700 Sobic008G006800--Sobic010G119300 Sobic008G006800--Sobic003G260700 Sobic008G006800--Sobic001G398400 Sobic004G339500 Sobic004G339500 Sobic008G006800--Sobic004G339500 Sobic008G006800--Sobic010G017400 Sobic008G006800--Sobic004G271300 Sobic002G313000 Sobic002G313000 Sobic008G006800--Sobic002G313000 Sobic008G006800--Sobic002G296000 Sobic001G477400--Sobic005G005700 Sobic001G477400--Sobic001G398400 Sobic001G477400--Sobic008G006800 Sobic001G477400--Sobic006G124400 Sobic004G198100 Sobic004G198100 Sobic001G477400--Sobic004G198100 Sobic001G477400--Sobic010G119300 Sobic001G477400--Sobic004G273000 Sobic001G477400--Sobic004G271300 Sobic001G477400--Sobic003G260700 Sobic001G398400--Sobic003G260700 Sobic001G170800 Sobic001G170800 Sobic001G398400--Sobic001G170800 Sobic001G398400--Sobic008G006800 Sobic001G398400--Sobic009G184200 Sobic001G398400--Sobic004G271300 Sobic001G398400--Sobic005G005700 Sobic001G398400--Sobic010G105400 Sobic001G398400--Sobic004G198100 Sobic004G257600 Sobic004G257600 Sobic001G398400--Sobic004G257600
Octagon: transcription factors


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