Gene annotation
Transcriptome id Sobic.001G477400.1
Synonym Sb01g044720
Functional annotation AUXIN SIGNALING F-BOX 2, putative, expressed
UniProt C5WUV5
Pfam -
Panther DB PTHR24006 PTHR24006:SF430
NCBI CDD KOG1947; Leucine rich repeat proteins, some proteins contain F-box
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G24390 : RNI-like superfamily protein
RAP-DB (Rice) LOC_Os03g08850.1 : AUXIN SIGNALING F-BOX 2, putative, expressed
MaizeGDB (Corn) Zm00025a001010 , Zm00025a053231
Brachypodium KQK23221
Barley HORVU4Hr1G078120.8 , HORVU4Hr1G078120.3 , HORVU4Hr1G078120.6 , HORVU4Hr1G078120.4
Wheat TraesCS4D02G301800 , TraesCS4A02G001800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G005700 inactive receptor kinase At2g26730 precursor, putative, expressed -
2 Sobic.001G398400 expressed protein -
3 Sobic.008G006800 inactive receptor kinase At2g26730 precursor, putative, expressed -
4 Sobic.006G124400 ATP binding protein, putative, expressed -
5 Sobic.004G198100 expressed protein -
6 Sobic.010G119300 expressed protein -
7 Sobic.004G273000 MYB family transcription factor, putative, expressed -
8 Sobic.004G271300 DNA topoisomerase 2, putative, expressed K03164: DNA topoisomerase II
9 Sobic.003G260700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
10 Sobic.004G339500 kinesin motor domain containing protein, putative, expressed -
11 Sobic.007G027900 chloroplast unusual positioning protein, putative, expressed -
12 Sobic.004G287700 expressed protein -
13 Sobic.010G017400 DLT(Ortholog in rice:Tong et al. (2012))(PubMedID : 31659927)@DELLA protein SLR1, putative, expressed -
14 Sobic.007G168900 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
15 Sobic.001G170800 "Transport protein(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659835)@transport protein-related, putative, expressed -
16 Sobic.002G296000 HEAT repeat family protein, putative, expressed -
17 Sobic.007G145000 D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed K00058: serA, D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase
18 Sobic.003G102000 expressed protein -
19 Sobic.005G000500 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
20 Sobic.006G191900 ZR1 protein, putative, expressed -


Gene co-expression network
sample Sobic001G477400 Sobic001G477400 Sobic005G005700 Sobic005G005700 Sobic001G477400--Sobic005G005700 Sobic001G398400 Sobic001G398400 Sobic001G477400--Sobic001G398400 Sobic008G006800 Sobic008G006800 Sobic001G477400--Sobic008G006800 Sobic006G124400 Sobic006G124400 Sobic001G477400--Sobic006G124400 Sobic004G198100 Sobic004G198100 Sobic001G477400--Sobic004G198100 Sobic010G119300 Sobic010G119300 Sobic001G477400--Sobic010G119300 Sobic004G273000 Sobic004G273000 Sobic001G477400--Sobic004G273000 Sobic004G271300 Sobic004G271300 Sobic001G477400--Sobic004G271300 Sobic003G260700 Sobic003G260700 Sobic001G477400--Sobic003G260700 Sobic005G005700--Sobic008G006800 Sobic005G005700--Sobic004G271300 Sobic010G017400 Sobic010G017400 Sobic005G005700--Sobic010G017400 Sobic002G296000 Sobic002G296000 Sobic005G005700--Sobic002G296000 Sobic005G005700--Sobic001G398400 Sobic005G005700--Sobic010G119300 Sobic005G005700--Sobic003G260700 Sobic007G027900 Sobic007G027900 Sobic005G005700--Sobic007G027900 Sobic007G168900 Sobic007G168900 Sobic005G005700--Sobic007G168900 Sobic001G398400--Sobic003G260700 Sobic001G170800 Sobic001G170800 Sobic001G398400--Sobic001G170800 Sobic001G398400--Sobic008G006800 Sobic009G184200 Sobic009G184200 Sobic001G398400--Sobic009G184200 Sobic001G398400--Sobic004G271300 Sobic001G398400--Sobic005G005700 Sobic010G105400 Sobic010G105400 Sobic001G398400--Sobic010G105400 Sobic001G398400--Sobic004G198100 Sobic004G257600 Sobic004G257600 Sobic001G398400--Sobic004G257600 Sobic008G006800--Sobic005G005700 Sobic008G006800--Sobic010G119300 Sobic008G006800--Sobic003G260700 Sobic008G006800--Sobic001G398400 Sobic004G339500 Sobic004G339500 Sobic008G006800--Sobic004G339500 Sobic008G006800--Sobic010G017400 Sobic008G006800--Sobic004G271300 Sobic002G313000 Sobic002G313000 Sobic008G006800--Sobic002G313000 Sobic008G006800--Sobic002G296000 Sobic006G124400--Sobic002G296000 Sobic006G124400--Sobic010G105400 Sobic009G101100 Sobic009G101100 Sobic006G124400--Sobic009G101100 Sobic006G124400--Sobic007G027900 Sobic006G124400--Sobic004G273000 Sobic006G124400--Sobic005G005700 Sobic006G124400--Sobic008G006800 Sobic006G124400--Sobic001G477400 Sobic006G124400--Sobic001G398400 Sobic004G198100--Sobic003G260700 Sobic004G198100--Sobic010G119300 Sobic004G198100--Sobic001G398400 Sobic008G125700 Sobic008G125700 Sobic004G198100--Sobic008G125700 Sobic004G198100--Sobic004G257600 Sobic004G198100--Sobic001G170800 Sobic004G198100--Sobic004G339500 Sobic004G198100--Sobic002G313000 Sobic004G198100--Sobic004G271300 Sobic010G119300--Sobic008G125700 Sobic010G119300--Sobic008G006800 Sobic010G119300--Sobic003G260700 Sobic010G119300--Sobic004G198100 Sobic003G102000 Sobic003G102000 Sobic010G119300--Sobic003G102000 Sobic010G119300--Sobic005G005700 Sobic010G119300--Sobic004G339500 Sobic008G114900 Sobic008G114900 Sobic010G119300--Sobic008G114900 Sobic010G119300--Sobic001G398400 Sobic004G273000--Sobic006G124400 Sobic004G273000--Sobic001G477400 Sobic002G392500 Sobic002G392500 Sobic004G273000--Sobic002G392500 Sobic004G273000--Sobic007G027900 Sobic004G273000--Sobic010G105400 Sobic004G273000--Sobic002G296000 Sobic001G289900 Sobic001G289900 Sobic004G273000--Sobic001G289900 Sobic010G261700 Sobic010G261700 Sobic004G273000--Sobic010G261700 Sobic004G273000--Sobic005G005700 Sobic004G271300--Sobic007G168900 Sobic005G000500 Sobic005G000500 Sobic004G271300--Sobic005G000500 Sobic004G271300--Sobic003G260700 Sobic004G271300--Sobic001G170800 Sobic004G271300--Sobic005G005700 Sobic004G271300--Sobic001G398400 Sobic004G271300--Sobic008G006800 Sobic001G177900 Sobic001G177900 Sobic004G271300--Sobic001G177900 Sobic005G144600 Sobic005G144600 Sobic004G271300--Sobic005G144600 Sobic003G260700--Sobic001G170800 Sobic003G260700--Sobic004G257600 Sobic003G260700--Sobic004G339500 Sobic003G260700--Sobic001G398400 Sobic003G260700--Sobic004G198100 Sobic003G260700--Sobic004G271300 Sobic003G260700--Sobic008G006800 Sobic003G260700--Sobic001G177900 Sobic003G260700--Sobic002G313000
Octagon: transcription factors


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