Gene annotation
Transcriptome id Sobic.007G145000.1
Synonym Sb07g021980, PGDH
Functional annotation D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed
UniProt C5YLQ3
Pfam PF07991 PF01842 PF00389
Panther DB PTHR10996 PTHR10996:SF140
NCBI CDD -
KEGG Orthology K00058; serA, D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase
Gene Ontology GO:0016597; amino acid binding GO:0008152metabolic process GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor


Orthologs (automatic annotation)
TAIR AT1G17745 : D-3-phosphoglycerate dehydrogenase
RAP-DB (Rice) LOC_Os08g34720.1 : D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a005822
Brachypodium KQJ98498 , KQJ98499 , KQK13007 , KQK16889 , KQJ85000
Barley HORVU1Hr1G056180.2 , HORVU2Hr1G113180.4 , HORVU1Hr1G056180.1 , HORVU1Hr1G056180.3 , HORVU1Hr1G056180.5 , HORVU1Hr1G056180.4 , HORVU1Hr1G056180.6 , HORVU2Hr1G113180.2 , HORVU2Hr1G113180.3 , HORVU2Hr1G113180.1
Wheat TraesCS3A02G146800 , TraesCS3A02G146800 , TraesCS1D02G222600 , TraesCS1D02G222600 , TraesCS1B02G234300 , TraesCS1B02G234300 , TraesCS1A02G221000 , TraesCS1A02G221000
Populus -


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cDNA sequences
Sobic.007G145000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G477400 AUXIN SIGNALING F-BOX 2, putative, expressed -
2 Sobic.003G102000 expressed protein -
3 Sobic.003G260700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
4 Sobic.004G339500 kinesin motor domain containing protein, putative, expressed -
5 Sobic.004G198100 expressed protein -
6 Sobic.004G287700 expressed protein -
7 Sobic.001G416000 kinesin-related protein, putative, expressed K10398: KIF11, kinesin family member 11
8 Sobic.010G119300 expressed protein -
9 Sobic.005G005700 inactive receptor kinase At2g26730 precursor, putative, expressed -
10 Sobic.008G006800 inactive receptor kinase At2g26730 precursor, putative, expressed -
11 Sobic.002G426800 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.008G125700 similar to F22D16.26 protein(PubMedID : 29862293)@CSLD4 - cellulose synthase-like family D, expressed K00770: 1,4-beta-D-xylan synthase
13 Sobic.003G314900 flap endonuclease, putative, expressed K10746: exonuclease 1
14 Sobic.001G398400 expressed protein -
15 Sobic.003G328500 Expressed in younger stem(PubMedID : 28649278)@cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
16 Sobic.001G289900 AT hook motif domain containing protein, expressed -
17 Sobic.006G144300 expressed protein -
18 Sobic.007G132900 linker histone H1 and H5 family protein, expressed -
19 Sobic.004G271300 DNA topoisomerase 2, putative, expressed K03164: DNA topoisomerase II
20 Sobic.007G219400 expressed protein -


Gene co-expression network
sample Sobic007G145000 Sobic007G145000 Sobic001G477400 Sobic001G477400 Sobic007G145000--Sobic001G477400 Sobic003G102000 Sobic003G102000 Sobic007G145000--Sobic003G102000 Sobic003G260700 Sobic003G260700 Sobic007G145000--Sobic003G260700 Sobic004G339500 Sobic004G339500 Sobic007G145000--Sobic004G339500 Sobic004G198100 Sobic004G198100 Sobic007G145000--Sobic004G198100 Sobic004G287700 Sobic004G287700 Sobic007G145000--Sobic004G287700 Sobic001G416000 Sobic001G416000 Sobic007G145000--Sobic001G416000 Sobic010G119300 Sobic010G119300 Sobic007G145000--Sobic010G119300 Sobic005G005700 Sobic005G005700 Sobic007G145000--Sobic005G005700 Sobic001G477400--Sobic005G005700 Sobic001G398400 Sobic001G398400 Sobic001G477400--Sobic001G398400 Sobic008G006800 Sobic008G006800 Sobic001G477400--Sobic008G006800 Sobic006G124400 Sobic006G124400 Sobic001G477400--Sobic006G124400 Sobic001G477400--Sobic004G198100 Sobic001G477400--Sobic010G119300 Sobic004G273000 Sobic004G273000 Sobic001G477400--Sobic004G273000 Sobic004G271300 Sobic004G271300 Sobic001G477400--Sobic004G271300 Sobic001G477400--Sobic003G260700 Sobic008G125700 Sobic008G125700 Sobic003G102000--Sobic008G125700 Sobic003G102000--Sobic003G260700 Sobic003G102000--Sobic010G119300 Sobic003G102000--Sobic004G339500 Sobic008G114900 Sobic008G114900 Sobic003G102000--Sobic008G114900 Sobic004G257600 Sobic004G257600 Sobic003G102000--Sobic004G257600 Sobic003G102000--Sobic004G198100 Sobic003G102000--Sobic008G006800 Sobic002G313000 Sobic002G313000 Sobic003G102000--Sobic002G313000 Sobic001G170800 Sobic001G170800 Sobic003G260700--Sobic001G170800 Sobic003G260700--Sobic004G257600 Sobic003G260700--Sobic004G339500 Sobic003G260700--Sobic001G398400 Sobic003G260700--Sobic004G198100 Sobic003G260700--Sobic004G271300 Sobic003G260700--Sobic008G006800 Sobic001G177900 Sobic001G177900 Sobic003G260700--Sobic001G177900 Sobic003G260700--Sobic002G313000 Sobic004G339500--Sobic003G260700 Sobic004G339500--Sobic008G006800 Sobic004G339500--Sobic001G170800 Sobic004G339500--Sobic001G177900 Sobic004G339500--Sobic010G119300 Sobic004G339500--Sobic003G102000 Sobic004G339500--Sobic004G198100 Sobic004G339500--Sobic008G125700 Sobic004G339500--Sobic005G005700 Sobic004G198100--Sobic003G260700 Sobic004G198100--Sobic010G119300 Sobic004G198100--Sobic001G398400 Sobic004G198100--Sobic008G125700 Sobic004G198100--Sobic004G257600 Sobic004G198100--Sobic001G170800 Sobic004G198100--Sobic004G339500 Sobic004G198100--Sobic002G313000 Sobic004G198100--Sobic004G271300 Sobic010G017400 Sobic010G017400 Sobic004G287700--Sobic010G017400 Sobic004G287700--Sobic001G477400 Sobic002G142200 Sobic002G142200 Sobic004G287700--Sobic002G142200 Sobic004G287700--Sobic001G177900 Sobic004G287700--Sobic004G339500 Sobic010G008900 Sobic010G008900 Sobic004G287700--Sobic010G008900 Sobic002G255500 Sobic002G255500 Sobic004G287700--Sobic002G255500 Sobic004G287700--Sobic001G170800 Sobic003G314900 Sobic003G314900 Sobic004G287700--Sobic003G314900 Sobic001G416000--Sobic002G255500 Sobic001G416000--Sobic003G314900 Sobic001G416000--Sobic010G008900 Sobic005G000500 Sobic005G000500 Sobic001G416000--Sobic005G000500 Sobic008G148000 Sobic008G148000 Sobic001G416000--Sobic008G148000 Sobic001G416000--Sobic001G170800 Sobic007G168900 Sobic007G168900 Sobic001G416000--Sobic007G168900 Sobic001G416000--Sobic004G271300 Sobic005G144600 Sobic005G144600 Sobic001G416000--Sobic005G144600 Sobic010G119300--Sobic008G125700 Sobic010G119300--Sobic008G006800 Sobic010G119300--Sobic003G260700 Sobic010G119300--Sobic004G198100 Sobic010G119300--Sobic003G102000 Sobic010G119300--Sobic005G005700 Sobic010G119300--Sobic004G339500 Sobic010G119300--Sobic008G114900 Sobic010G119300--Sobic001G398400 Sobic005G005700--Sobic008G006800 Sobic005G005700--Sobic004G271300 Sobic005G005700--Sobic010G017400 Sobic002G296000 Sobic002G296000 Sobic005G005700--Sobic002G296000 Sobic005G005700--Sobic001G398400 Sobic005G005700--Sobic010G119300 Sobic005G005700--Sobic003G260700 Sobic007G027900 Sobic007G027900 Sobic005G005700--Sobic007G027900 Sobic005G005700--Sobic007G168900
Octagon: transcription factors


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