Gene annotation
Transcriptome id Sobic.007G132900.1
Synonym Sb07g020920, HMGA
Functional annotation linker histone H1 and H5 family protein, expressed
UniProt C5YL42
Pfam PF00538
Panther DB PTHR11467 PTHR11467:SF43
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006334; nucleosome assembly GO:0005634nucleus GO:0003677DNA binding GO:0000786nucleosome


Orthologs (automatic annotation)
TAIR AT1G14900 : high mobility group A
RAP-DB (Rice) LOC_Os08g33190.1 : linker histone H1 and H5 family protein, expressed
MaizeGDB (Corn) Zm00025a031100 , Zm00025a005985
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.007G132900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G289900 AT hook motif domain containing protein, expressed -
2 Sobic.006G065400 expressed protein -
3 Sobic.002G289800 HMG1/2, putative, expressed -
4 Sobic.003G102000 expressed protein -
5 Sobic.009G120700 microtubule-binding protein TANGLED1, putative, expressed K18636: microtubule-binding protein TANGLED1
6 Sobic.010G119300 expressed protein -
7 Sobic.003G260700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
8 Sobic.004G198100 expressed protein -
9 Sobic.002G353200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsBZR1(Ortholog in rice:Zhu et al. (2015))(PubMedID : 31659861)@BES1/BZR1 homolog protein, putative, expressed K14503: brassinosteroid resistant 1/2
10 Sobic.010G129700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
11 Sobic.004G257600 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
12 Sobic.001G091500 expressed protein -
13 Sobic.004G327600 expressed protein -
14 Sobic.003G387700 expressed protein -
15 Sobic.001G160100 IQ calmodulin-binding motif family protein, putative, expressed -
16 Sobic.003G328500 Expressed in younger stem(PubMedID : 28649278)@cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
17 Sobic.003G013000 inactive receptor kinase At2g26730 precursor, putative, expressed -
18 Sobic.008G125700 similar to F22D16.26 protein(PubMedID : 29862293)@CSLD4 - cellulose synthase-like family D, expressed K00770: 1,4-beta-D-xylan synthase
19 Sobic.004G063600 CYPRO4, putative, expressed -
20 Sobic.007G100600 plastocyanin-like domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic007G132900 Sobic007G132900 Sobic001G289900 Sobic001G289900 Sobic007G132900--Sobic001G289900 Sobic006G065400 Sobic006G065400 Sobic007G132900--Sobic006G065400 Sobic002G289800 Sobic002G289800 Sobic007G132900--Sobic002G289800 Sobic003G102000 Sobic003G102000 Sobic007G132900--Sobic003G102000 Sobic009G120700 Sobic009G120700 Sobic007G132900--Sobic009G120700 Sobic010G119300 Sobic010G119300 Sobic007G132900--Sobic010G119300 Sobic003G260700 Sobic003G260700 Sobic007G132900--Sobic003G260700 Sobic004G198100 Sobic004G198100 Sobic007G132900--Sobic004G198100 Sobic002G353200 Sobic002G353200 Sobic007G132900--Sobic002G353200 Sobic010G105400 Sobic010G105400 Sobic001G289900--Sobic010G105400 Sobic001G289900--Sobic002G289800 Sobic001G289900--Sobic007G132900 Sobic003G387700 Sobic003G387700 Sobic001G289900--Sobic003G387700 Sobic004G047100 Sobic004G047100 Sobic001G289900--Sobic004G047100 Sobic001G398400 Sobic001G398400 Sobic001G289900--Sobic001G398400 Sobic004G273000 Sobic004G273000 Sobic001G289900--Sobic004G273000 Sobic001G091500 Sobic001G091500 Sobic001G289900--Sobic001G091500 Sobic002G426800 Sobic002G426800 Sobic001G289900--Sobic002G426800 Sobic006G065400--Sobic010G119300 Sobic006G065400--Sobic007G132900 Sobic006G065400--Sobic004G198100 Sobic006G065400--Sobic009G120700 Sobic006G065400--Sobic001G091500 Sobic005G005700 Sobic005G005700 Sobic006G065400--Sobic005G005700 Sobic001G477400 Sobic001G477400 Sobic006G065400--Sobic001G477400 Sobic001G160100 Sobic001G160100 Sobic006G065400--Sobic001G160100 Sobic006G065400--Sobic003G102000 Sobic002G289800--Sobic001G289900 Sobic007G017700 Sobic007G017700 Sobic002G289800--Sobic007G017700 Sobic003G316601 Sobic003G316601 Sobic002G289800--Sobic003G316601 Sobic004G237000 Sobic004G237000 Sobic002G289800--Sobic004G237000 Sobic004G327600 Sobic004G327600 Sobic002G289800--Sobic004G327600 Sobic002G289800--Sobic007G132900 Sobic010G222100 Sobic010G222100 Sobic002G289800--Sobic010G222100 Sobic001G300400 Sobic001G300400 Sobic002G289800--Sobic001G300400 Sobic006G081800 Sobic006G081800 Sobic002G289800--Sobic006G081800 Sobic008G125700 Sobic008G125700 Sobic003G102000--Sobic008G125700 Sobic003G102000--Sobic003G260700 Sobic003G102000--Sobic010G119300 Sobic004G339500 Sobic004G339500 Sobic003G102000--Sobic004G339500 Sobic008G114900 Sobic008G114900 Sobic003G102000--Sobic008G114900 Sobic004G257600 Sobic004G257600 Sobic003G102000--Sobic004G257600 Sobic003G102000--Sobic004G198100 Sobic008G006800 Sobic008G006800 Sobic003G102000--Sobic008G006800 Sobic002G313000 Sobic002G313000 Sobic003G102000--Sobic002G313000 Sobic009G120700--Sobic001G091500 Sobic009G120700--Sobic010G119300 Sobic009G120700--Sobic003G102000 Sobic003G328500 Sobic003G328500 Sobic009G120700--Sobic003G328500 Sobic009G120700--Sobic003G387700 Sobic009G120700--Sobic002G426800 Sobic007G100600 Sobic007G100600 Sobic009G120700--Sobic007G100600 Sobic001G230300 Sobic001G230300 Sobic009G120700--Sobic001G230300 Sobic009G120700--Sobic007G132900 Sobic010G119300--Sobic008G125700 Sobic010G119300--Sobic008G006800 Sobic010G119300--Sobic003G260700 Sobic010G119300--Sobic004G198100 Sobic010G119300--Sobic003G102000 Sobic010G119300--Sobic005G005700 Sobic010G119300--Sobic004G339500 Sobic010G119300--Sobic008G114900 Sobic010G119300--Sobic001G398400 Sobic001G170800 Sobic001G170800 Sobic003G260700--Sobic001G170800 Sobic003G260700--Sobic004G257600 Sobic003G260700--Sobic004G339500 Sobic003G260700--Sobic001G398400 Sobic003G260700--Sobic004G198100 Sobic004G271300 Sobic004G271300 Sobic003G260700--Sobic004G271300 Sobic003G260700--Sobic008G006800 Sobic001G177900 Sobic001G177900 Sobic003G260700--Sobic001G177900 Sobic003G260700--Sobic002G313000 Sobic004G198100--Sobic003G260700 Sobic004G198100--Sobic010G119300 Sobic004G198100--Sobic001G398400 Sobic004G198100--Sobic008G125700 Sobic004G198100--Sobic004G257600 Sobic004G198100--Sobic001G170800 Sobic004G198100--Sobic004G339500 Sobic004G198100--Sobic002G313000 Sobic004G198100--Sobic004G271300 Sobic002G353200--Sobic010G222100 Sobic002G353200--Sobic001G289900 Sobic002G353200--Sobic007G132900 Sobic002G353200--Sobic001G300400 Sobic004G331200 Sobic004G331200 Sobic002G353200--Sobic004G331200 Sobic002G353200--Sobic003G102000 Sobic002G353200--Sobic002G289800 Sobic001G030400 Sobic001G030400 Sobic002G353200--Sobic001G030400 Sobic003G410600 Sobic003G410600 Sobic002G353200--Sobic003G410600
Octagon: transcription factors


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