Gene annotation
Transcriptome id Sobic.004G063600.1
Synonym Sb04g005290
Functional annotation CYPRO4, putative, expressed
UniProt C5XWA3
Pfam PF08553
Panther DB PTHR31913 PTHR31913:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G33400 : Vacuolar import/degradation, Vid27-related protein
RAP-DB (Rice) LOC_Os02g08190.1 : CYPRO4, putative, expressed
MaizeGDB (Corn) Zm00025a019192 , Zm00025a034729
Brachypodium KQJ93628
Barley HORVU6Hr1G029930.1 , HORVU6Hr1G029930.3 , HORVU6Hr1G029930.2 , HORVU6Hr1G029950.2 , HORVU6Hr1G029950.1
Wheat TraesCS6D02G140500 , TraesCS6D02G140500 , TraesCS6A02G150500 , TraesCS6B02G178600
Populus -


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cDNA sequences
Sobic.004G063600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G058100 FHA domain containing protein, putative, expressed -
2 Sobic.003G260700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
3 Sobic.002G204400 kinesin motor protein-related, putative, expressed K11498: centromeric protein E
4 Sobic.003G084100 expressed protein -
5 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3
6 Sobic.009G131200 expressed protein -
7 Sobic.004G198100 expressed protein -
8 Sobic.001G398400 expressed protein -
9 Sobic.001G091500 expressed protein -
10 Sobic.009G184200 RecF/RecN/SMC N terminal domain containing protein, expressed K06675: structural maintenance of chromosome 4
11 Sobic.001G170800 "Transport protein(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659835)@transport protein-related, putative, expressed -
12 Sobic.008G148000 kinesin motor domain containing protein, putative, expressed K10400: kinesin family member 15
13 Sobic.004G047100 EH domain-containing protein 1, putative, expressed K12483: EH domain-containing protein 1
14 Sobic.002G426800 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.005G000500 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
16 Sobic.003G444100 "OsCCS52B(Ortholog in rice:Su’udi et al., 2012)"(PubMedID : 31659875)@WD repeat-containing protein, putative, expressed K03364: cell division cycle 20-like protein 1, cofactor of APC complex
17 Sobic.006G193100 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
18 Sobic.001G082800 ORC5 - Putative origin recognition complex subunit 5, expressed K02607: origin recognition complex subunit 5
19 Sobic.001G289900 AT hook motif domain containing protein, expressed -
20 Sobic.006G221800 OsFBX46 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic004G063600 Sobic004G063600 Sobic009G058100 Sobic009G058100 Sobic004G063600--Sobic009G058100 Sobic003G260700 Sobic003G260700 Sobic004G063600--Sobic003G260700 Sobic002G204400 Sobic002G204400 Sobic004G063600--Sobic002G204400 Sobic003G084100 Sobic003G084100 Sobic004G063600--Sobic003G084100 Sobic010G105400 Sobic010G105400 Sobic004G063600--Sobic010G105400 Sobic009G131200 Sobic009G131200 Sobic004G063600--Sobic009G131200 Sobic004G198100 Sobic004G198100 Sobic004G063600--Sobic004G198100 Sobic001G398400 Sobic001G398400 Sobic004G063600--Sobic001G398400 Sobic001G091500 Sobic001G091500 Sobic004G063600--Sobic001G091500 Sobic009G058100--Sobic004G063600 Sobic009G136000 Sobic009G136000 Sobic009G058100--Sobic009G136000 Sobic001G082800 Sobic001G082800 Sobic009G058100--Sobic001G082800 Sobic009G125800 Sobic009G125800 Sobic009G058100--Sobic009G125800 Sobic008G148000 Sobic008G148000 Sobic009G058100--Sobic008G148000 Sobic009G058100--Sobic009G131200 Sobic009G058100--Sobic002G204400 Sobic001G170800 Sobic001G170800 Sobic009G058100--Sobic001G170800 Sobic009G058100--Sobic004G198100 Sobic003G260700--Sobic001G170800 Sobic004G257600 Sobic004G257600 Sobic003G260700--Sobic004G257600 Sobic004G339500 Sobic004G339500 Sobic003G260700--Sobic004G339500 Sobic003G260700--Sobic001G398400 Sobic003G260700--Sobic004G198100 Sobic004G271300 Sobic004G271300 Sobic003G260700--Sobic004G271300 Sobic008G006800 Sobic008G006800 Sobic003G260700--Sobic008G006800 Sobic001G177900 Sobic001G177900 Sobic003G260700--Sobic001G177900 Sobic002G313000 Sobic002G313000 Sobic003G260700--Sobic002G313000 Sobic009G184200 Sobic009G184200 Sobic002G204400--Sobic009G184200 Sobic002G204400--Sobic008G148000 Sobic003G393100 Sobic003G393100 Sobic002G204400--Sobic003G393100 Sobic002G204400--Sobic010G105400 Sobic006G281400 Sobic006G281400 Sobic002G204400--Sobic006G281400 Sobic005G000500 Sobic005G000500 Sobic002G204400--Sobic005G000500 Sobic007G027900 Sobic007G027900 Sobic002G204400--Sobic007G027900 Sobic002G204400--Sobic001G398400 Sobic002G204400--Sobic004G271300 Sobic008G125700 Sobic008G125700 Sobic003G084100--Sobic008G125700 Sobic003G084100--Sobic004G063600 Sobic003G084100--Sobic001G091500 Sobic004G237000 Sobic004G237000 Sobic003G084100--Sobic004G237000 Sobic001G393200 Sobic001G393200 Sobic003G084100--Sobic001G393200 Sobic010G119300 Sobic010G119300 Sobic003G084100--Sobic010G119300 Sobic008G114900 Sobic008G114900 Sobic003G084100--Sobic008G114900 Sobic003G010700 Sobic003G010700 Sobic003G084100--Sobic003G010700 Sobic001G496400 Sobic001G496400 Sobic003G084100--Sobic001G496400 Sobic005G144600 Sobic005G144600 Sobic010G105400--Sobic005G144600 Sobic004G047100 Sobic004G047100 Sobic010G105400--Sobic004G047100 Sobic010G105400--Sobic009G184200 Sobic010G105400--Sobic005G000500 Sobic010G105400--Sobic001G398400 Sobic003G179500 Sobic003G179500 Sobic010G105400--Sobic003G179500 Sobic006G124400 Sobic006G124400 Sobic010G105400--Sobic006G124400 Sobic007G168900 Sobic007G168900 Sobic010G105400--Sobic007G168900 Sobic010G105400--Sobic002G204400 Sobic009G131200--Sobic009G125800 Sobic008G004900 Sobic008G004900 Sobic009G131200--Sobic008G004900 Sobic009G131200--Sobic001G082800 Sobic009G131200--Sobic009G136000 Sobic009G131200--Sobic004G063600 Sobic004G117400 Sobic004G117400 Sobic009G131200--Sobic004G117400 Sobic009G131200--Sobic009G058100 Sobic001G069700 Sobic001G069700 Sobic009G131200--Sobic001G069700 Sobic010G009700 Sobic010G009700 Sobic009G131200--Sobic010G009700 Sobic004G198100--Sobic003G260700 Sobic004G198100--Sobic010G119300 Sobic004G198100--Sobic001G398400 Sobic004G198100--Sobic008G125700 Sobic004G198100--Sobic004G257600 Sobic004G198100--Sobic001G170800 Sobic004G198100--Sobic004G339500 Sobic004G198100--Sobic002G313000 Sobic004G198100--Sobic004G271300 Sobic001G398400--Sobic003G260700 Sobic001G398400--Sobic001G170800 Sobic001G398400--Sobic008G006800 Sobic001G398400--Sobic009G184200 Sobic001G398400--Sobic004G271300 Sobic005G005700 Sobic005G005700 Sobic001G398400--Sobic005G005700 Sobic001G398400--Sobic010G105400 Sobic001G398400--Sobic004G198100 Sobic001G398400--Sobic004G257600 Sobic002G426800 Sobic002G426800 Sobic001G091500--Sobic002G426800 Sobic003G387700 Sobic003G387700 Sobic001G091500--Sobic003G387700 Sobic009G120700 Sobic009G120700 Sobic001G091500--Sobic009G120700 Sobic001G091500--Sobic003G260700 Sobic001G091500--Sobic004G047100 Sobic002G222500 Sobic002G222500 Sobic001G091500--Sobic002G222500 Sobic001G091500--Sobic004G339500 Sobic001G091500--Sobic010G119300 Sobic001G091500--Sobic004G198100
Octagon: transcription factors


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