Gene annotation
Transcriptome id Sobic.009G184200.2,Sobic.009G184200.1
Synonym ATCAP-C, Sb09g024390, ATSMC3, ATSMC4, SMC3
Functional annotation RecF/RecN/SMC N terminal domain containing protein, expressed
UniProt A0A1Z5R375 , C5Z0A0
Pfam PF13476 PF06470 PF13304 PF06470
Panther DB PTHR18937 PTHR18937:SF231
NCBI CDD -
KEGG Orthology K06675; structural maintenance of chromosome 4
Gene Ontology GO:0005694; chromosome GO:0005524ATP binding GO:0005515protein binding GO:0005524ATP binding GO:0005694chromosome GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G48600 : structural maintenance of chromosome 3
RAP-DB (Rice) LOC_Os05g41750.1 : RecF/RecN/SMC N terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a044105 , Zm00025a016481 , Zm00025a037726 , Zm00025a025084 , Zm00025a025085
Brachypodium KQK05593
Barley HORVU1Hr1G067140.9 , HORVU1Hr1G067140.8 , HORVU1Hr1G067140.1 , HORVU1Hr1G067140.3 , HORVU1Hr1G067140.2 , HORVU1Hr1G067140.5 , HORVU1Hr1G067140.4 , HORVU1Hr1G067140.7 , HORVU1Hr1G067140.30 , HORVU1Hr1G067140.20 , HORVU1Hr1G067140.21 , HORVU1Hr1G067140.22 , HORVU1Hr1G067140.23 , HORVU1Hr1G067140.25 , HORVU1Hr1G067140.26 , HORVU1Hr1G067140.27 , HORVU1Hr1G067140.19 , HORVU1Hr1G067140.18 , HORVU1Hr1G067140.15 , HORVU1Hr1G067140.14 , HORVU1Hr1G067140.17 , HORVU1Hr1G067140.16 , HORVU1Hr1G067140.11 , HORVU1Hr1G067140.10 , HORVU1Hr1G067140.13 , HORVU1Hr1G067140.12 , HORVU1Hr1G067140.28 , HORVU1Hr1G067140.29 , HORVU1Hr1G067140.24 , HORVU1Hr1G067140.6
Wheat TraesCS1A02G314100 , TraesCS1B02G326400 , TraesCS1D02G314600 , TraesCS1D02G314600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G204400 kinesin motor protein-related, putative, expressed K11498: centromeric protein E
2 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3
3 Sobic.001G398400 expressed protein -
4 Sobic.003G393100 chromosome segregation protein, putative, expressed K06674: structural maintenance of chromosome 2
5 Sobic.010G129700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
6 Sobic.003G032200 IQ calmodulin-binding motif domain containing protein, expressed -
7 Sobic.001G170800 "Transport protein(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659835)@transport protein-related, putative, expressed -
8 Sobic.007G007800 DNA repair metallo-beta-lactamase, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
9 Sobic.003G260700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
10 Sobic.005G000500 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
11 Sobic.001G105800 OsFBX109 - F-box domain containing protein, expressed -
12 Sobic.002G272300 expressed protein -
13 Sobic.008G148000 kinesin motor domain containing protein, putative, expressed K10400: kinesin family member 15
14 Sobic.002G313000 targeting protein-related, putative, expressed K16812: targeting protein for Xklp2
15 Sobic.003G369200 POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed K02320: DNA polymerase alpha subunit A
16 Sobic.004G257600 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
17 Sobic.003G444100 "OsCCS52B(Ortholog in rice:Su’udi et al., 2012)"(PubMedID : 31659875)@WD repeat-containing protein, putative, expressed K03364: cell division cycle 20-like protein 1, cofactor of APC complex
18 Sobic.004G271300 DNA topoisomerase 2, putative, expressed K03164: DNA topoisomerase II
19 Sobic.004G198100 expressed protein -
20 Sobic.007G168900 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11


Gene co-expression network
sample Sobic009G184200 Sobic009G184200 Sobic002G204400 Sobic002G204400 Sobic009G184200--Sobic002G204400 Sobic010G105400 Sobic010G105400 Sobic009G184200--Sobic010G105400 Sobic001G398400 Sobic001G398400 Sobic009G184200--Sobic001G398400 Sobic003G393100 Sobic003G393100 Sobic009G184200--Sobic003G393100 Sobic010G129700 Sobic010G129700 Sobic009G184200--Sobic010G129700 Sobic003G032200 Sobic003G032200 Sobic009G184200--Sobic003G032200 Sobic001G170800 Sobic001G170800 Sobic009G184200--Sobic001G170800 Sobic007G007800 Sobic007G007800 Sobic009G184200--Sobic007G007800 Sobic003G260700 Sobic003G260700 Sobic009G184200--Sobic003G260700 Sobic002G204400--Sobic009G184200 Sobic008G148000 Sobic008G148000 Sobic002G204400--Sobic008G148000 Sobic002G204400--Sobic003G393100 Sobic002G204400--Sobic010G105400 Sobic006G281400 Sobic006G281400 Sobic002G204400--Sobic006G281400 Sobic005G000500 Sobic005G000500 Sobic002G204400--Sobic005G000500 Sobic007G027900 Sobic007G027900 Sobic002G204400--Sobic007G027900 Sobic002G204400--Sobic001G398400 Sobic004G271300 Sobic004G271300 Sobic002G204400--Sobic004G271300 Sobic005G144600 Sobic005G144600 Sobic010G105400--Sobic005G144600 Sobic004G047100 Sobic004G047100 Sobic010G105400--Sobic004G047100 Sobic010G105400--Sobic009G184200 Sobic010G105400--Sobic005G000500 Sobic010G105400--Sobic001G398400 Sobic003G179500 Sobic003G179500 Sobic010G105400--Sobic003G179500 Sobic006G124400 Sobic006G124400 Sobic010G105400--Sobic006G124400 Sobic007G168900 Sobic007G168900 Sobic010G105400--Sobic007G168900 Sobic010G105400--Sobic002G204400 Sobic001G398400--Sobic003G260700 Sobic001G398400--Sobic001G170800 Sobic008G006800 Sobic008G006800 Sobic001G398400--Sobic008G006800 Sobic001G398400--Sobic009G184200 Sobic001G398400--Sobic004G271300 Sobic005G005700 Sobic005G005700 Sobic001G398400--Sobic005G005700 Sobic001G398400--Sobic010G105400 Sobic004G198100 Sobic004G198100 Sobic001G398400--Sobic004G198100 Sobic004G257600 Sobic004G257600 Sobic001G398400--Sobic004G257600 Sobic003G393100--Sobic009G184200 Sobic003G393100--Sobic002G204400 Sobic003G369200 Sobic003G369200 Sobic003G393100--Sobic003G369200 Sobic003G393100--Sobic001G398400 Sobic003G393100--Sobic008G148000 Sobic003G393100--Sobic006G281400 Sobic008G070700 Sobic008G070700 Sobic003G393100--Sobic008G070700 Sobic003G393100--Sobic007G007800 Sobic004G321400 Sobic004G321400 Sobic003G393100--Sobic004G321400 Sobic002G313000 Sobic002G313000 Sobic010G129700--Sobic002G313000 Sobic010G129700--Sobic009G184200 Sobic010G129700--Sobic001G398400 Sobic010G129700--Sobic003G260700 Sobic001G493900 Sobic001G493900 Sobic010G129700--Sobic001G493900 Sobic008G114900 Sobic008G114900 Sobic010G129700--Sobic008G114900 Sobic004G267600 Sobic004G267600 Sobic010G129700--Sobic004G267600 Sobic007G116800 Sobic007G116800 Sobic010G129700--Sobic007G116800 Sobic010G129700--Sobic008G006800 Sobic003G032200--Sobic009G184200 Sobic010G086000 Sobic010G086000 Sobic003G032200--Sobic010G086000 Sobic003G032200--Sobic010G105400 Sobic010G241100 Sobic010G241100 Sobic003G032200--Sobic010G241100 Sobic009G172950 Sobic009G172950 Sobic003G032200--Sobic009G172950 Sobic006G142500 Sobic006G142500 Sobic003G032200--Sobic006G142500 Sobic002G296000 Sobic002G296000 Sobic003G032200--Sobic002G296000 Sobic003G444100 Sobic003G444100 Sobic003G032200--Sobic003G444100 Sobic003G032200--Sobic002G204400 Sobic001G170800--Sobic005G000500 Sobic001G170800--Sobic003G260700 Sobic001G170800--Sobic003G444100 Sobic001G170800--Sobic001G398400 Sobic001G170800--Sobic004G271300 Sobic001G170800--Sobic008G148000 Sobic010G008900 Sobic010G008900 Sobic001G170800--Sobic010G008900 Sobic001G177900 Sobic001G177900 Sobic001G170800--Sobic001G177900 Sobic004G339500 Sobic004G339500 Sobic001G170800--Sobic004G339500 Sobic002G272300 Sobic002G272300 Sobic007G007800--Sobic002G272300 Sobic001G105800 Sobic001G105800 Sobic007G007800--Sobic001G105800 Sobic007G007800--Sobic009G184200 Sobic001G013400 Sobic001G013400 Sobic007G007800--Sobic001G013400 Sobic002G223900 Sobic002G223900 Sobic007G007800--Sobic002G223900 Sobic004G331600 Sobic004G331600 Sobic007G007800--Sobic004G331600 Sobic005G020100 Sobic005G020100 Sobic007G007800--Sobic005G020100 Sobic010G092400 Sobic010G092400 Sobic007G007800--Sobic010G092400 Sobic001G083300 Sobic001G083300 Sobic007G007800--Sobic001G083300 Sobic003G260700--Sobic001G170800 Sobic003G260700--Sobic004G257600 Sobic003G260700--Sobic004G339500 Sobic003G260700--Sobic001G398400 Sobic003G260700--Sobic004G198100 Sobic003G260700--Sobic004G271300 Sobic003G260700--Sobic008G006800 Sobic003G260700--Sobic001G177900 Sobic003G260700--Sobic002G313000
Octagon: transcription factors


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