Gene annotation
Transcriptome id Sobic.002G272300.1,Sobic.002G272300.2
Synonym Sb02g030600
Functional annotation expressed protein
UniProt A0A1W0W5Y9 , C5X652
Pfam -
Panther DB PTHR35117
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G54060 : -
RAP-DB (Rice) ChrSy.fgenesh.mRNA.80,LOC_Os03g01008.1 : expressed protein
MaizeGDB (Corn) Zm00025a044820
Brachypodium PNT77237 , KQK21265
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G007800 DNA repair metallo-beta-lactamase, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
2 Sobic.009G184200 RecF/RecN/SMC N terminal domain containing protein, expressed K06675: structural maintenance of chromosome 4
3 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
4 Sobic.003G032200 IQ calmodulin-binding motif domain containing protein, expressed -
5 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
6 Sobic.001G083300 transducin family protein, putative, expressed K02180: cell cycle arrest protein BUB3
7 Sobic.004G331600 MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed K02209: MCM5, DNA replication licensing factor MCM5
8 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
9 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
10 Sobic.003G361200 CDC6 - Putative DNA replication initiation protein, expressed K02213: cell division control protein 6
11 Sobic.002G223900 OsFBX330 - F-box domain containing protein, expressed -
12 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
13 Sobic.001G142000 deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed K01520: dut, dUTP pyrophosphatase
14 Sobic.005G020100 CDC45B - Putative DNA replication initiation protein, expressed K06628: cell division control protein 45
15 Sobic.004G257600 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
16 Sobic.001G105800 OsFBX109 - F-box domain containing protein, expressed -
17 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein
18 Sobic.001G013400 nuf2 family protein, expressed -
19 Sobic.003G369200 POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed K02320: DNA polymerase alpha subunit A
20 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein


Gene co-expression network
sample Sobic002G272300 Sobic002G272300 Sobic007G007800 Sobic007G007800 Sobic002G272300--Sobic007G007800 Sobic009G184200 Sobic009G184200 Sobic002G272300--Sobic009G184200 Sobic010G147700 Sobic010G147700 Sobic002G272300--Sobic010G147700 Sobic003G032200 Sobic003G032200 Sobic002G272300--Sobic003G032200 Sobic009G087000 Sobic009G087000 Sobic002G272300--Sobic009G087000 Sobic001G083300 Sobic001G083300 Sobic002G272300--Sobic001G083300 Sobic004G331600 Sobic004G331600 Sobic002G272300--Sobic004G331600 Sobic008G129200 Sobic008G129200 Sobic002G272300--Sobic008G129200 Sobic001G456500 Sobic001G456500 Sobic002G272300--Sobic001G456500 Sobic007G007800--Sobic002G272300 Sobic001G105800 Sobic001G105800 Sobic007G007800--Sobic001G105800 Sobic007G007800--Sobic009G184200 Sobic001G013400 Sobic001G013400 Sobic007G007800--Sobic001G013400 Sobic002G223900 Sobic002G223900 Sobic007G007800--Sobic002G223900 Sobic007G007800--Sobic004G331600 Sobic005G020100 Sobic005G020100 Sobic007G007800--Sobic005G020100 Sobic010G092400 Sobic010G092400 Sobic007G007800--Sobic010G092400 Sobic007G007800--Sobic001G083300 Sobic002G204400 Sobic002G204400 Sobic009G184200--Sobic002G204400 Sobic010G105400 Sobic010G105400 Sobic009G184200--Sobic010G105400 Sobic001G398400 Sobic001G398400 Sobic009G184200--Sobic001G398400 Sobic003G393100 Sobic003G393100 Sobic009G184200--Sobic003G393100 Sobic010G129700 Sobic010G129700 Sobic009G184200--Sobic010G129700 Sobic009G184200--Sobic003G032200 Sobic001G170800 Sobic001G170800 Sobic009G184200--Sobic001G170800 Sobic009G184200--Sobic007G007800 Sobic003G260700 Sobic003G260700 Sobic009G184200--Sobic003G260700 Sobic006G029300 Sobic006G029300 Sobic010G147700--Sobic006G029300 Sobic010G147700--Sobic009G087000 Sobic005G110535 Sobic005G110535 Sobic010G147700--Sobic005G110535 Sobic003G369200 Sobic003G369200 Sobic010G147700--Sobic003G369200 Sobic007G168900 Sobic007G168900 Sobic010G147700--Sobic007G168900 Sobic010G147700--Sobic008G129200 Sobic005G144600 Sobic005G144600 Sobic010G147700--Sobic005G144600 Sobic003G183700 Sobic003G183700 Sobic010G147700--Sobic003G183700 Sobic003G201000 Sobic003G201000 Sobic010G147700--Sobic003G201000 Sobic003G032200--Sobic009G184200 Sobic010G086000 Sobic010G086000 Sobic003G032200--Sobic010G086000 Sobic003G032200--Sobic010G105400 Sobic010G241100 Sobic010G241100 Sobic003G032200--Sobic010G241100 Sobic009G172950 Sobic009G172950 Sobic003G032200--Sobic009G172950 Sobic006G142500 Sobic006G142500 Sobic003G032200--Sobic006G142500 Sobic002G296000 Sobic002G296000 Sobic003G032200--Sobic002G296000 Sobic003G444100 Sobic003G444100 Sobic003G032200--Sobic003G444100 Sobic003G032200--Sobic002G204400 Sobic009G087000--Sobic010G147700 Sobic009G087000--Sobic003G183700 Sobic009G087000--Sobic005G110535 Sobic009G087000--Sobic008G129200 Sobic009G087000--Sobic006G029300 Sobic009G087000--Sobic003G369200 Sobic004G321400 Sobic004G321400 Sobic009G087000--Sobic004G321400 Sobic009G087000--Sobic004G331600 Sobic003G179500 Sobic003G179500 Sobic009G087000--Sobic003G179500 Sobic001G083300--Sobic001G456500 Sobic001G083300--Sobic002G223900 Sobic003G444300 Sobic003G444300 Sobic001G083300--Sobic003G444300 Sobic001G083300--Sobic010G147700 Sobic001G083300--Sobic009G087000 Sobic001G083300--Sobic003G183700 Sobic001G083300--Sobic008G129200 Sobic001G083300--Sobic001G105800 Sobic001G083300--Sobic004G331600 Sobic004G331600--Sobic001G456500 Sobic004G331600--Sobic008G129200 Sobic010G054600 Sobic010G054600 Sobic004G331600--Sobic010G054600 Sobic004G331600--Sobic009G087000 Sobic001G142000 Sobic001G142000 Sobic004G331600--Sobic001G142000 Sobic004G331600--Sobic002G223900 Sobic004G331600--Sobic003G183700 Sobic004G331600--Sobic010G147700 Sobic004G331600--Sobic007G007800 Sobic008G129200--Sobic004G331600 Sobic008G129200--Sobic009G087000 Sobic008G129200--Sobic005G110535 Sobic008G129200--Sobic001G456500 Sobic008G129200--Sobic010G147700 Sobic008G129200--Sobic003G183700 Sobic008G129200--Sobic001G083300 Sobic008G129200--Sobic010G054600 Sobic006G116500 Sobic006G116500 Sobic008G129200--Sobic006G116500 Sobic001G456500--Sobic006G116500 Sobic001G456500--Sobic004G331600 Sobic001G456500--Sobic001G142000 Sobic001G456500--Sobic001G083300 Sobic001G456500--Sobic008G129200 Sobic001G456500--Sobic002G223900 Sobic001G169800 Sobic001G169800 Sobic001G456500--Sobic001G169800 Sobic001G456500--Sobic003G444300 Sobic004G355500 Sobic004G355500 Sobic001G456500--Sobic004G355500
Octagon: transcription factors


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