Gene annotation
Transcriptome id Sobic.001G013400.1
Synonym
Functional annotation nuf2 family protein, expressed
UniProt A0A1B6QGR8
Pfam PF03800
Panther DB PTHR21650
NCBI CDD KOG4438; Centromere-associated protein NUF2
KEGG Orthology -
Gene Ontology GO:0007067; mitotic cell cycle GO:0000775chromosome, centromeric region


Orthologs (automatic annotation)
TAIR AT1G61000 : -
RAP-DB (Rice) LOC_Os03g38010.1 : nuf2 family protein, expressed
MaizeGDB (Corn) Zm00025a009022
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G025900 expressed protein -
2 Sobic.007G007800 DNA repair metallo-beta-lactamase, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
3 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein
4 Sobic.002G113400 dnaJ domain containing protein, expressed -
5 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
6 Sobic.001G142000 deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed K01520: dut, dUTP pyrophosphatase
7 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
8 Sobic.001G083300 transducin family protein, putative, expressed K02180: cell cycle arrest protein BUB3
9 Sobic.004G331600 MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed K02209: MCM5, DNA replication licensing factor MCM5
10 Sobic.009G184200 RecF/RecN/SMC N terminal domain containing protein, expressed K06675: structural maintenance of chromosome 4
11 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
12 Sobic.004G321400 BRUSHY 1, putative, expressed -
13 Sobic.001G105800 OsFBX109 - F-box domain containing protein, expressed -
14 Sobic.004G053900 expressed protein -
15 Sobic.003G444300 expressed protein K11550: SPBC25, kinetochore protein Spc25, animal type
16 Sobic.010G054600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribonucleoside-diphosphate reductase large subunit, putative, expressed K10807: ribonucleoside-diphosphate reductase subunit M1
17 Sobic.003G201000 WD domain, G-beta repeat domain containing protein, expressed -
18 Sobic.002G272300 expressed protein -
19 Sobic.004G075900 CSLA1 - cellulose synthase-like family A@ mannan synthase, expressed K13680: beta-mannan synthase
20 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein


Gene co-expression network
sample Sobic001G013400 Sobic001G013400 Sobic001G025900 Sobic001G025900 Sobic001G013400--Sobic001G025900 Sobic007G007800 Sobic007G007800 Sobic001G013400--Sobic007G007800 Sobic002G290000 Sobic002G290000 Sobic001G013400--Sobic002G290000 Sobic002G113400 Sobic002G113400 Sobic001G013400--Sobic002G113400 Sobic008G129200 Sobic008G129200 Sobic001G013400--Sobic008G129200 Sobic001G142000 Sobic001G142000 Sobic001G013400--Sobic001G142000 Sobic005G110535 Sobic005G110535 Sobic001G013400--Sobic005G110535 Sobic001G083300 Sobic001G083300 Sobic001G013400--Sobic001G083300 Sobic004G331600 Sobic004G331600 Sobic001G013400--Sobic004G331600 Sobic001G025900--Sobic001G013400 Sobic001G025900--Sobic002G113400 Sobic001G025900--Sobic002G290000 Sobic002G271400 Sobic002G271400 Sobic001G025900--Sobic002G271400 Sobic001G025900--Sobic005G110535 Sobic004G321400 Sobic004G321400 Sobic001G025900--Sobic004G321400 Sobic004G053900 Sobic004G053900 Sobic001G025900--Sobic004G053900 Sobic004G328300 Sobic004G328300 Sobic001G025900--Sobic004G328300 Sobic006G236800 Sobic006G236800 Sobic001G025900--Sobic006G236800 Sobic002G272300 Sobic002G272300 Sobic007G007800--Sobic002G272300 Sobic001G105800 Sobic001G105800 Sobic007G007800--Sobic001G105800 Sobic009G184200 Sobic009G184200 Sobic007G007800--Sobic009G184200 Sobic007G007800--Sobic001G013400 Sobic002G223900 Sobic002G223900 Sobic007G007800--Sobic002G223900 Sobic007G007800--Sobic004G331600 Sobic005G020100 Sobic005G020100 Sobic007G007800--Sobic005G020100 Sobic010G092400 Sobic010G092400 Sobic007G007800--Sobic010G092400 Sobic007G007800--Sobic001G083300 Sobic002G290000--Sobic005G110535 Sobic001G377700 Sobic001G377700 Sobic002G290000--Sobic001G377700 Sobic007G125300 Sobic007G125300 Sobic002G290000--Sobic007G125300 Sobic009G087000 Sobic009G087000 Sobic002G290000--Sobic009G087000 Sobic010G147700 Sobic010G147700 Sobic002G290000--Sobic010G147700 Sobic002G290000--Sobic001G013400 Sobic002G290000--Sobic002G113400 Sobic002G290000--Sobic008G129200 Sobic002G290000--Sobic004G053900 Sobic002G113400--Sobic004G053900 Sobic002G113400--Sobic001G025900 Sobic002G297500 Sobic002G297500 Sobic002G113400--Sobic002G297500 Sobic002G113400--Sobic002G290000 Sobic002G113400--Sobic001G013400 Sobic008G148000 Sobic008G148000 Sobic002G113400--Sobic008G148000 Sobic002G113400--Sobic005G110535 Sobic002G113400--Sobic007G125300 Sobic010G051100 Sobic010G051100 Sobic002G113400--Sobic010G051100 Sobic008G129200--Sobic004G331600 Sobic008G129200--Sobic009G087000 Sobic008G129200--Sobic005G110535 Sobic001G456500 Sobic001G456500 Sobic008G129200--Sobic001G456500 Sobic008G129200--Sobic010G147700 Sobic003G183700 Sobic003G183700 Sobic008G129200--Sobic003G183700 Sobic008G129200--Sobic001G083300 Sobic010G054600 Sobic010G054600 Sobic008G129200--Sobic010G054600 Sobic006G116500 Sobic006G116500 Sobic008G129200--Sobic006G116500 Sobic001G142000--Sobic001G456500 Sobic001G142000--Sobic010G054600 Sobic001G142000--Sobic004G331600 Sobic003G444300 Sobic003G444300 Sobic001G142000--Sobic003G444300 Sobic001G142000--Sobic008G129200 Sobic001G142000--Sobic001G083300 Sobic001G142000--Sobic006G116500 Sobic001G142000--Sobic001G013400 Sobic004G075900 Sobic004G075900 Sobic001G142000--Sobic004G075900 Sobic005G110535--Sobic002G290000 Sobic005G110535--Sobic009G087000 Sobic005G110535--Sobic010G147700 Sobic005G110535--Sobic008G129200 Sobic005G110535--Sobic003G183700 Sobic003G369200 Sobic003G369200 Sobic005G110535--Sobic003G369200 Sobic005G110535--Sobic004G321400 Sobic003G179500 Sobic003G179500 Sobic005G110535--Sobic003G179500 Sobic005G110535--Sobic001G377700 Sobic001G083300--Sobic001G456500 Sobic001G083300--Sobic002G223900 Sobic001G083300--Sobic003G444300 Sobic001G083300--Sobic010G147700 Sobic001G083300--Sobic009G087000 Sobic001G083300--Sobic003G183700 Sobic001G083300--Sobic008G129200 Sobic001G083300--Sobic001G105800 Sobic001G083300--Sobic004G331600 Sobic004G331600--Sobic001G456500 Sobic004G331600--Sobic008G129200 Sobic004G331600--Sobic010G054600 Sobic004G331600--Sobic009G087000 Sobic004G331600--Sobic001G142000 Sobic004G331600--Sobic002G223900 Sobic004G331600--Sobic003G183700 Sobic004G331600--Sobic010G147700 Sobic004G331600--Sobic007G007800
Octagon: transcription factors


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