Gene annotation
Transcriptome id Sobic.001G456500.1
Synonym Sb01g042890, RPA70B, ATRPA70B
Functional annotation RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed
UniProt C5WST0
Pfam PF01336 PF04057 PF16900 PF08646
Panther DB PTHR23273 PTHR23273:SF4
NCBI CDD KOG0851; Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins
KEGG Orthology K07466; RFA1, RPA1, replication factor A1
Gene Ontology GO:0003676; nucleic acid binding GO:0006260DNA replication GO:0005634nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G08020 : RPA70-kDa subunit B
RAP-DB (Rice) LOC_Os03g11540.1 : RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed
MaizeGDB (Corn) Zm00025a001292 , Zm00025a053069 , Zm00025a045076
Brachypodium KQK22902
Barley -
Wheat TraesCS4B02G246900 , TraesCS4A02G058000 , TraesCS4D02G246300
Populus -


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cDNA sequences
Sobic.001G456500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G116500 expressed protein -
2 Sobic.004G331600 MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed K02209: MCM5, DNA replication licensing factor MCM5
3 Sobic.001G142000 deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed K01520: dut, dUTP pyrophosphatase
4 Sobic.001G083300 transducin family protein, putative, expressed K02180: cell cycle arrest protein BUB3
5 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
6 Sobic.002G223900 OsFBX330 - F-box domain containing protein, expressed -
7 Sobic.001G169800 cyclin, putative, expressed K06627: cyclin-A
8 Sobic.003G444300 expressed protein K11550: SPBC25, kinetochore protein Spc25, animal type
9 Sobic.004G355500 RPA2A - Putative single-stranded DNA binding complex subunit 2, expressed K10739: RFA2, replication factor A2
10 Sobic.003G361200 CDC6 - Putative DNA replication initiation protein, expressed K02213: cell division control protein 6
11 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
12 Sobic.010G054600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribonucleoside-diphosphate reductase large subunit, putative, expressed K10807: ribonucleoside-diphosphate reductase subunit M1
13 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
14 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
15 Sobic.001G105800 OsFBX109 - F-box domain containing protein, expressed -
16 Sobic.004G197400 expressed protein K00558: DNMT1, DNA (cytosine-5)-methyltransferase 1
17 Sobic.002G272300 expressed protein -
18 Sobic.003G201000 WD domain, G-beta repeat domain containing protein, expressed -
19 Sobic.007G007800 DNA repair metallo-beta-lactamase, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
20 Sobic.001G013400 nuf2 family protein, expressed -


Gene co-expression network
sample Sobic001G456500 Sobic001G456500 Sobic006G116500 Sobic006G116500 Sobic001G456500--Sobic006G116500 Sobic004G331600 Sobic004G331600 Sobic001G456500--Sobic004G331600 Sobic001G142000 Sobic001G142000 Sobic001G456500--Sobic001G142000 Sobic001G083300 Sobic001G083300 Sobic001G456500--Sobic001G083300 Sobic008G129200 Sobic008G129200 Sobic001G456500--Sobic008G129200 Sobic002G223900 Sobic002G223900 Sobic001G456500--Sobic002G223900 Sobic001G169800 Sobic001G169800 Sobic001G456500--Sobic001G169800 Sobic003G444300 Sobic003G444300 Sobic001G456500--Sobic003G444300 Sobic004G355500 Sobic004G355500 Sobic001G456500--Sobic004G355500 Sobic006G116500--Sobic001G456500 Sobic006G116500--Sobic004G355500 Sobic006G116500--Sobic001G169800 Sobic001G070300 Sobic001G070300 Sobic006G116500--Sobic001G070300 Sobic003G179500 Sobic003G179500 Sobic006G116500--Sobic003G179500 Sobic006G116500--Sobic008G129200 Sobic006G116500--Sobic002G223900 Sobic006G116500--Sobic004G331600 Sobic004G047100 Sobic004G047100 Sobic006G116500--Sobic004G047100 Sobic004G331600--Sobic001G456500 Sobic004G331600--Sobic008G129200 Sobic010G054600 Sobic010G054600 Sobic004G331600--Sobic010G054600 Sobic009G087000 Sobic009G087000 Sobic004G331600--Sobic009G087000 Sobic004G331600--Sobic001G142000 Sobic004G331600--Sobic002G223900 Sobic003G183700 Sobic003G183700 Sobic004G331600--Sobic003G183700 Sobic010G147700 Sobic010G147700 Sobic004G331600--Sobic010G147700 Sobic007G007800 Sobic007G007800 Sobic004G331600--Sobic007G007800 Sobic001G142000--Sobic001G456500 Sobic001G142000--Sobic010G054600 Sobic001G142000--Sobic004G331600 Sobic001G142000--Sobic003G444300 Sobic001G142000--Sobic008G129200 Sobic001G142000--Sobic001G083300 Sobic001G142000--Sobic006G116500 Sobic001G013400 Sobic001G013400 Sobic001G142000--Sobic001G013400 Sobic004G075900 Sobic004G075900 Sobic001G142000--Sobic004G075900 Sobic001G083300--Sobic001G456500 Sobic001G083300--Sobic002G223900 Sobic001G083300--Sobic003G444300 Sobic001G083300--Sobic010G147700 Sobic001G083300--Sobic009G087000 Sobic001G083300--Sobic003G183700 Sobic001G083300--Sobic008G129200 Sobic001G105800 Sobic001G105800 Sobic001G083300--Sobic001G105800 Sobic001G083300--Sobic004G331600 Sobic008G129200--Sobic004G331600 Sobic008G129200--Sobic009G087000 Sobic005G110535 Sobic005G110535 Sobic008G129200--Sobic005G110535 Sobic008G129200--Sobic001G456500 Sobic008G129200--Sobic010G147700 Sobic008G129200--Sobic003G183700 Sobic008G129200--Sobic001G083300 Sobic008G129200--Sobic010G054600 Sobic008G129200--Sobic006G116500 Sobic002G223900--Sobic001G456500 Sobic002G223900--Sobic001G083300 Sobic002G223900--Sobic001G105800 Sobic002G223900--Sobic004G331600 Sobic002G223900--Sobic007G007800 Sobic002G223900--Sobic008G129200 Sobic002G223900--Sobic006G116500 Sobic002G223900--Sobic003G183700 Sobic003G387700 Sobic003G387700 Sobic002G223900--Sobic003G387700 Sobic001G169800--Sobic001G456500 Sobic001G169800--Sobic006G116500 Sobic001G169800--Sobic003G444300 Sobic001G169800--Sobic001G083300 Sobic001G169800--Sobic002G223900 Sobic001G169800--Sobic003G183700 Sobic001G169800--Sobic001G105800 Sobic001G169800--Sobic004G355500 Sobic001G169800--Sobic003G179500 Sobic003G444300--Sobic001G456500 Sobic003G444300--Sobic001G083300 Sobic003G444300--Sobic001G169800 Sobic003G444300--Sobic001G105800 Sobic003G444300--Sobic001G142000 Sobic003G444300--Sobic004G331600 Sobic003G201000 Sobic003G201000 Sobic003G444300--Sobic003G201000 Sobic002G303800 Sobic002G303800 Sobic003G444300--Sobic002G303800 Sobic010G105400 Sobic010G105400 Sobic003G444300--Sobic010G105400 Sobic004G355500--Sobic006G116500 Sobic004G355500--Sobic001G456500 Sobic007G152900 Sobic007G152900 Sobic004G355500--Sobic007G152900 Sobic010G103700 Sobic010G103700 Sobic004G355500--Sobic010G103700 Sobic004G355500--Sobic001G169800 Sobic004G197400 Sobic004G197400 Sobic004G355500--Sobic004G197400 Sobic009G088200 Sobic009G088200 Sobic004G355500--Sobic009G088200 Sobic001G103000 Sobic001G103000 Sobic004G355500--Sobic001G103000 Sobic004G355500--Sobic008G129200
Octagon: transcription factors


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