Gene annotation
Transcriptome id Sobic.004G355500.1
Synonym ATRPA2, ATRPA32A, RPA2, Sb04g038190, RPA32A, ROR1
Functional annotation RPA2A - Putative single-stranded DNA binding complex subunit 2, expressed
UniProt C5XWP7
Pfam PF08784
Panther DB PTHR13989 PTHR13989:SF16
NCBI CDD KOG3108; Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit
KEGG Orthology K10739; RFA2, replication factor A2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G24490 : replicon protein A2
RAP-DB (Rice) LOC_Os02g58220.1 : RPA2A - Putative single-stranded DNA binding complex subunit 2, expressed
MaizeGDB (Corn) Zm00025a022665
Brachypodium KQK02112
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G116500 expressed protein -
2 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
3 Sobic.007G152900 POLE2A - Putative DNA polymerase epsilon complex subunit, expressed K02325: DNA polymerase epsilon subunit 2
4 Sobic.010G103700 POLA2 - Putative DNA polymerase alpha complex subunit, expressed K02321: DNA polymerase alpha subunit B
5 Sobic.001G169800 cyclin, putative, expressed K06627: cyclin-A
6 Sobic.004G197400 expressed protein K00558: DNMT1, DNA (cytosine-5)-methyltransferase 1
7 Sobic.009G088200 -(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
8 Sobic.001G103000 DNA binding protein, putative, expressed -
9 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
10 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
11 Sobic.001G083300 transducin family protein, putative, expressed K02180: cell cycle arrest protein BUB3
12 Sobic.004G020600 ATXR, putative, expressed -
13 Sobic.001G078600 CAMK_CAMK_like_Aur_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
14 Sobic.007G079600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FabA-like domain containing protein, expressed K02372: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase
15 Sobic.001G070300 expressed protein -
16 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
17 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
18 Sobic.003G361200 CDC6 - Putative DNA replication initiation protein, expressed K02213: cell division control protein 6
19 Sobic.001G142000 deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed K01520: dut, dUTP pyrophosphatase
20 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4


Gene co-expression network
sample Sobic004G355500 Sobic004G355500 Sobic006G116500 Sobic006G116500 Sobic004G355500--Sobic006G116500 Sobic001G456500 Sobic001G456500 Sobic004G355500--Sobic001G456500 Sobic007G152900 Sobic007G152900 Sobic004G355500--Sobic007G152900 Sobic010G103700 Sobic010G103700 Sobic004G355500--Sobic010G103700 Sobic001G169800 Sobic001G169800 Sobic004G355500--Sobic001G169800 Sobic004G197400 Sobic004G197400 Sobic004G355500--Sobic004G197400 Sobic009G088200 Sobic009G088200 Sobic004G355500--Sobic009G088200 Sobic001G103000 Sobic001G103000 Sobic004G355500--Sobic001G103000 Sobic008G129200 Sobic008G129200 Sobic004G355500--Sobic008G129200 Sobic006G116500--Sobic001G456500 Sobic006G116500--Sobic004G355500 Sobic006G116500--Sobic001G169800 Sobic001G070300 Sobic001G070300 Sobic006G116500--Sobic001G070300 Sobic003G179500 Sobic003G179500 Sobic006G116500--Sobic003G179500 Sobic006G116500--Sobic008G129200 Sobic002G223900 Sobic002G223900 Sobic006G116500--Sobic002G223900 Sobic004G331600 Sobic004G331600 Sobic006G116500--Sobic004G331600 Sobic004G047100 Sobic004G047100 Sobic006G116500--Sobic004G047100 Sobic001G456500--Sobic006G116500 Sobic001G456500--Sobic004G331600 Sobic001G142000 Sobic001G142000 Sobic001G456500--Sobic001G142000 Sobic001G083300 Sobic001G083300 Sobic001G456500--Sobic001G083300 Sobic001G456500--Sobic008G129200 Sobic001G456500--Sobic002G223900 Sobic001G456500--Sobic001G169800 Sobic003G444300 Sobic003G444300 Sobic001G456500--Sobic003G444300 Sobic001G456500--Sobic004G355500 Sobic007G152900--Sobic004G355500 Sobic007G152900--Sobic010G103700 Sobic007G152900--Sobic006G116500 Sobic007G152900--Sobic009G088200 Sobic007G152900--Sobic001G070300 Sobic010G274000 Sobic010G274000 Sobic007G152900--Sobic010G274000 Sobic006G140100 Sobic006G140100 Sobic007G152900--Sobic006G140100 Sobic002G280700 Sobic002G280700 Sobic007G152900--Sobic002G280700 Sobic007G152900--Sobic001G103000 Sobic003G183700 Sobic003G183700 Sobic010G103700--Sobic003G183700 Sobic010G103700--Sobic003G179500 Sobic006G120600 Sobic006G120600 Sobic010G103700--Sobic006G120600 Sobic006G195500 Sobic006G195500 Sobic010G103700--Sobic006G195500 Sobic006G051000 Sobic006G051000 Sobic010G103700--Sobic006G051000 Sobic009G087000 Sobic009G087000 Sobic010G103700--Sobic009G087000 Sobic010G147700 Sobic010G147700 Sobic010G103700--Sobic010G147700 Sobic010G103700--Sobic006G116500 Sobic010G103700--Sobic004G355500 Sobic001G169800--Sobic001G456500 Sobic001G169800--Sobic006G116500 Sobic001G169800--Sobic003G444300 Sobic001G169800--Sobic001G083300 Sobic001G169800--Sobic002G223900 Sobic001G169800--Sobic003G183700 Sobic001G105800 Sobic001G105800 Sobic001G169800--Sobic001G105800 Sobic001G169800--Sobic004G355500 Sobic001G169800--Sobic003G179500 Sobic003G294500 Sobic003G294500 Sobic004G197400--Sobic003G294500 Sobic005G144600 Sobic005G144600 Sobic004G197400--Sobic005G144600 Sobic004G197400--Sobic001G456500 Sobic004G197400--Sobic006G116500 Sobic004G197400--Sobic010G274000 Sobic004G197400--Sobic001G070300 Sobic001G078600 Sobic001G078600 Sobic004G197400--Sobic001G078600 Sobic004G197400--Sobic004G355500 Sobic004G197400--Sobic010G147700 Sobic009G088200--Sobic004G355500 Sobic009G088200--Sobic002G280700 Sobic009G088200--Sobic007G152900 Sobic003G396600 Sobic003G396600 Sobic009G088200--Sobic003G396600 Sobic007G079600 Sobic007G079600 Sobic009G088200--Sobic007G079600 Sobic009G088200--Sobic001G078600 Sobic009G088200--Sobic001G103000 Sobic010G032700 Sobic010G032700 Sobic009G088200--Sobic010G032700 Sobic005G047100 Sobic005G047100 Sobic009G088200--Sobic005G047100 Sobic001G103000--Sobic010G274000 Sobic001G103000--Sobic004G355500 Sobic002G191000 Sobic002G191000 Sobic001G103000--Sobic002G191000 Sobic007G139500 Sobic007G139500 Sobic001G103000--Sobic007G139500 Sobic003G135400 Sobic003G135400 Sobic001G103000--Sobic003G135400 Sobic003G410600 Sobic003G410600 Sobic001G103000--Sobic003G410600 Sobic001G103000--Sobic004G197400 Sobic001G103000--Sobic007G152900 Sobic001G103000--Sobic006G116500 Sobic008G129200--Sobic004G331600 Sobic008G129200--Sobic009G087000 Sobic005G110535 Sobic005G110535 Sobic008G129200--Sobic005G110535 Sobic008G129200--Sobic001G456500 Sobic008G129200--Sobic010G147700 Sobic008G129200--Sobic003G183700 Sobic008G129200--Sobic001G083300 Sobic010G054600 Sobic010G054600 Sobic008G129200--Sobic010G054600 Sobic008G129200--Sobic006G116500
Octagon: transcription factors


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