Gene annotation
Transcriptome id Sobic.001G083300.8,Sobic.001G083300.6,Sobic.001G083300.7,Sobic.001G083300.5
Synonym Sb01g007510
Functional annotation transducin family protein, putative, expressed
UniProt A0A1Z5S4V4 , A0A1Z5S4V5 , A0A1Z5S4U0
Pfam PF00400
Panther DB PTHR10971 PTHR10971:SF17
NCBI CDD KOG0647; mRNA export protein (contains WD40 repeats) KOG1036Mitotic spindle checkpoint protein BUB3, WD repeat superfamily
KEGG Orthology K02180; cell cycle arrest protein BUB3
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G69400 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os03g55140.2,LOC_Os03g55140.1 : transducin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a008235
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
2 Sobic.002G223900 OsFBX330 - F-box domain containing protein, expressed -
3 Sobic.003G444300 expressed protein K11550: SPBC25, kinetochore protein Spc25, animal type
4 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
5 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
6 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
7 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
8 Sobic.001G105800 OsFBX109 - F-box domain containing protein, expressed -
9 Sobic.004G331600 MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed K02209: MCM5, DNA replication licensing factor MCM5
10 Sobic.001G169800 cyclin, putative, expressed K06627: cyclin-A
11 Sobic.001G142000 deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed K01520: dut, dUTP pyrophosphatase
12 Sobic.006G116500 expressed protein -
13 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3
14 Sobic.009G172950 - K02541: DNA replication licensing factor MCM3
15 Sobic.002G272300 expressed protein -
16 Sobic.007G007800 DNA repair metallo-beta-lactamase, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
17 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
18 Sobic.001G013400 nuf2 family protein, expressed -
19 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
20 Sobic.009G184200 RecF/RecN/SMC N terminal domain containing protein, expressed K06675: structural maintenance of chromosome 4


Gene co-expression network
sample Sobic001G083300 Sobic001G083300 Sobic001G456500 Sobic001G456500 Sobic001G083300--Sobic001G456500 Sobic002G223900 Sobic002G223900 Sobic001G083300--Sobic002G223900 Sobic003G444300 Sobic003G444300 Sobic001G083300--Sobic003G444300 Sobic010G147700 Sobic010G147700 Sobic001G083300--Sobic010G147700 Sobic009G087000 Sobic009G087000 Sobic001G083300--Sobic009G087000 Sobic003G183700 Sobic003G183700 Sobic001G083300--Sobic003G183700 Sobic008G129200 Sobic008G129200 Sobic001G083300--Sobic008G129200 Sobic001G105800 Sobic001G105800 Sobic001G083300--Sobic001G105800 Sobic004G331600 Sobic004G331600 Sobic001G083300--Sobic004G331600 Sobic006G116500 Sobic006G116500 Sobic001G456500--Sobic006G116500 Sobic001G456500--Sobic004G331600 Sobic001G142000 Sobic001G142000 Sobic001G456500--Sobic001G142000 Sobic001G456500--Sobic001G083300 Sobic001G456500--Sobic008G129200 Sobic001G456500--Sobic002G223900 Sobic001G169800 Sobic001G169800 Sobic001G456500--Sobic001G169800 Sobic001G456500--Sobic003G444300 Sobic004G355500 Sobic004G355500 Sobic001G456500--Sobic004G355500 Sobic002G223900--Sobic001G456500 Sobic002G223900--Sobic001G083300 Sobic002G223900--Sobic001G105800 Sobic002G223900--Sobic004G331600 Sobic007G007800 Sobic007G007800 Sobic002G223900--Sobic007G007800 Sobic002G223900--Sobic008G129200 Sobic002G223900--Sobic006G116500 Sobic002G223900--Sobic003G183700 Sobic003G387700 Sobic003G387700 Sobic002G223900--Sobic003G387700 Sobic003G444300--Sobic001G456500 Sobic003G444300--Sobic001G083300 Sobic003G444300--Sobic001G169800 Sobic003G444300--Sobic001G105800 Sobic003G444300--Sobic001G142000 Sobic003G444300--Sobic004G331600 Sobic003G201000 Sobic003G201000 Sobic003G444300--Sobic003G201000 Sobic002G303800 Sobic002G303800 Sobic003G444300--Sobic002G303800 Sobic010G105400 Sobic010G105400 Sobic003G444300--Sobic010G105400 Sobic006G029300 Sobic006G029300 Sobic010G147700--Sobic006G029300 Sobic010G147700--Sobic009G087000 Sobic005G110535 Sobic005G110535 Sobic010G147700--Sobic005G110535 Sobic003G369200 Sobic003G369200 Sobic010G147700--Sobic003G369200 Sobic007G168900 Sobic007G168900 Sobic010G147700--Sobic007G168900 Sobic010G147700--Sobic008G129200 Sobic005G144600 Sobic005G144600 Sobic010G147700--Sobic005G144600 Sobic010G147700--Sobic003G183700 Sobic010G147700--Sobic003G201000 Sobic009G087000--Sobic010G147700 Sobic009G087000--Sobic003G183700 Sobic009G087000--Sobic005G110535 Sobic009G087000--Sobic008G129200 Sobic009G087000--Sobic006G029300 Sobic009G087000--Sobic003G369200 Sobic004G321400 Sobic004G321400 Sobic009G087000--Sobic004G321400 Sobic009G087000--Sobic004G331600 Sobic003G179500 Sobic003G179500 Sobic009G087000--Sobic003G179500 Sobic006G051000 Sobic006G051000 Sobic003G183700--Sobic006G051000 Sobic003G183700--Sobic009G087000 Sobic006G195500 Sobic006G195500 Sobic003G183700--Sobic006G195500 Sobic010G103700 Sobic010G103700 Sobic003G183700--Sobic010G103700 Sobic003G183700--Sobic003G179500 Sobic003G183700--Sobic005G110535 Sobic003G183700--Sobic008G129200 Sobic003G183700--Sobic004G321400 Sobic003G183700--Sobic010G147700 Sobic008G129200--Sobic004G331600 Sobic008G129200--Sobic009G087000 Sobic008G129200--Sobic005G110535 Sobic008G129200--Sobic001G456500 Sobic008G129200--Sobic010G147700 Sobic008G129200--Sobic003G183700 Sobic008G129200--Sobic001G083300 Sobic010G054600 Sobic010G054600 Sobic008G129200--Sobic010G054600 Sobic008G129200--Sobic006G116500 Sobic001G105800--Sobic007G007800 Sobic001G105800--Sobic002G223900 Sobic009G184200 Sobic009G184200 Sobic001G105800--Sobic009G184200 Sobic001G105800--Sobic003G444300 Sobic001G105800--Sobic003G387700 Sobic001G105800--Sobic001G083300 Sobic001G105800--Sobic001G456500 Sobic001G105800--Sobic010G105400 Sobic009G172950 Sobic009G172950 Sobic001G105800--Sobic009G172950 Sobic004G331600--Sobic001G456500 Sobic004G331600--Sobic008G129200 Sobic004G331600--Sobic010G054600 Sobic004G331600--Sobic009G087000 Sobic004G331600--Sobic001G142000 Sobic004G331600--Sobic002G223900 Sobic004G331600--Sobic003G183700 Sobic004G331600--Sobic010G147700 Sobic004G331600--Sobic007G007800
Octagon: transcription factors


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