Gene annotation
Transcriptome id Sobic.003G183700.1
Synonym Sb03g024490, MCM4
Functional annotation MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed
UniProt C5XMX5
Pfam PF14551 PF00493
Panther DB PTHR11630 PTHR11630:SF66
NCBI CDD -
KEGG Orthology K02212; MCM4, DNA replication licensing factor MCM4
Gene Ontology GO:0006260; DNA replication GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G16440 : Minichromosome maintenance (MCM2/3/5) family protein
RAP-DB (Rice) LOC_Os01g36390.1 : MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed
MaizeGDB (Corn) Zm00025a036440 , Zm00025a028817
Brachypodium KQK08235
Barley HORVU3Hr1G047230.31 , HORVU3Hr1G047230.30 , HORVU3Hr1G047230.33 , HORVU3Hr1G047230.32 , HORVU3Hr1G047230.35 , HORVU3Hr1G047230.34 , HORVU3Hr1G047230.37 , HORVU3Hr1G047230.36 , HORVU3Hr1G047230.28 , HORVU3Hr1G047230.29 , HORVU3Hr1G047230.26 , HORVU3Hr1G047230.27 , HORVU3Hr1G047230.24 , HORVU3Hr1G047230.25 , HORVU3Hr1G047230.22 , HORVU3Hr1G047230.23 , HORVU3Hr1G047230.20 , HORVU3Hr1G047230.21 , HORVU3Hr1G047230.3 , HORVU3Hr1G047230.9 , HORVU3Hr1G047230.8 , HORVU3Hr1G047230.7 , HORVU3Hr1G047230.6 , HORVU3Hr1G047230.5 , HORVU3Hr1G047230.4 , HORVU3Hr1G047230.2 , HORVU3Hr1G047230.1 , HORVU3Hr1G047230.17 , HORVU3Hr1G047230.16 , HORVU3Hr1G047230.15 , HORVU3Hr1G047230.14 , HORVU3Hr1G047230.13 , HORVU3Hr1G047230.12 , HORVU3Hr1G047230.11 , HORVU3Hr1G047230.10 , HORVU3Hr1G047230.19 , HORVU3Hr1G047230.18
Wheat TraesCS3D02G203400 , TraesCS3D02G203400 , TraesCS3D02G203400 , TraesCS3A02G200400 , TraesCS3A02G200400 , TraesCS3A02G200400 , TraesCS3B02G224600 , TraesCS3B02G224600 , TraesCS3B02G224600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G051000 POLA3 - Putative DNA polymerase alpha complex subunit, expressed K02685: DNA primase large subunit
2 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
3 Sobic.006G195500 DNA-binding protein, putative, expressed K10742: DNA replication ATP-dependent helicase Dna2
4 Sobic.010G103700 POLA2 - Putative DNA polymerase alpha complex subunit, expressed K02321: DNA polymerase alpha subunit B
5 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
6 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
7 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
8 Sobic.004G321400 BRUSHY 1, putative, expressed -
9 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
10 Sobic.001G083300 transducin family protein, putative, expressed K02180: cell cycle arrest protein BUB3
11 Sobic.004G331600 MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed K02209: MCM5, DNA replication licensing factor MCM5
12 Sobic.009G172950 - K02541: DNA replication licensing factor MCM3
13 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein
14 Sobic.003G369200 POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed K02320: DNA polymerase alpha subunit A
15 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein
16 Sobic.002G223900 OsFBX330 - F-box domain containing protein, expressed -
17 Sobic.006G120600 AAA-type ATPase family protein, putative, expressed -
18 Sobic.003G289800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
19 Sobic.003G055600 expressed protein -
20 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1


Gene co-expression network
sample Sobic003G183700 Sobic003G183700 Sobic006G051000 Sobic006G051000 Sobic003G183700--Sobic006G051000 Sobic009G087000 Sobic009G087000 Sobic003G183700--Sobic009G087000 Sobic006G195500 Sobic006G195500 Sobic003G183700--Sobic006G195500 Sobic010G103700 Sobic010G103700 Sobic003G183700--Sobic010G103700 Sobic003G179500 Sobic003G179500 Sobic003G183700--Sobic003G179500 Sobic005G110535 Sobic005G110535 Sobic003G183700--Sobic005G110535 Sobic008G129200 Sobic008G129200 Sobic003G183700--Sobic008G129200 Sobic004G321400 Sobic004G321400 Sobic003G183700--Sobic004G321400 Sobic010G147700 Sobic010G147700 Sobic003G183700--Sobic010G147700 Sobic006G051000--Sobic003G183700 Sobic006G051000--Sobic006G195500 Sobic006G051000--Sobic010G103700 Sobic006G196600 Sobic006G196600 Sobic006G051000--Sobic006G196600 Sobic006G051000--Sobic003G179500 Sobic006G051000--Sobic009G087000 Sobic009G109300 Sobic009G109300 Sobic006G051000--Sobic009G109300 Sobic006G051000--Sobic008G129200 Sobic006G051000--Sobic005G110535 Sobic009G087000--Sobic010G147700 Sobic009G087000--Sobic003G183700 Sobic009G087000--Sobic005G110535 Sobic009G087000--Sobic008G129200 Sobic006G029300 Sobic006G029300 Sobic009G087000--Sobic006G029300 Sobic003G369200 Sobic003G369200 Sobic009G087000--Sobic003G369200 Sobic009G087000--Sobic004G321400 Sobic004G331600 Sobic004G331600 Sobic009G087000--Sobic004G331600 Sobic009G087000--Sobic003G179500 Sobic006G195500--Sobic006G051000 Sobic006G195500--Sobic003G183700 Sobic006G195500--Sobic010G103700 Sobic001G377700 Sobic001G377700 Sobic006G195500--Sobic001G377700 Sobic006G195500--Sobic009G087000 Sobic006G120600 Sobic006G120600 Sobic006G195500--Sobic006G120600 Sobic006G195500--Sobic006G196600 Sobic006G195500--Sobic005G110535 Sobic006G195500--Sobic003G179500 Sobic010G103700--Sobic003G183700 Sobic010G103700--Sobic003G179500 Sobic010G103700--Sobic006G120600 Sobic010G103700--Sobic006G195500 Sobic010G103700--Sobic006G051000 Sobic010G103700--Sobic009G087000 Sobic010G103700--Sobic010G147700 Sobic006G116500 Sobic006G116500 Sobic010G103700--Sobic006G116500 Sobic004G355500 Sobic004G355500 Sobic010G103700--Sobic004G355500 Sobic003G179500--Sobic003G183700 Sobic003G179500--Sobic010G103700 Sobic010G105400 Sobic010G105400 Sobic003G179500--Sobic010G105400 Sobic005G144600 Sobic005G144600 Sobic003G179500--Sobic005G144600 Sobic003G179500--Sobic010G147700 Sobic003G179500--Sobic009G087000 Sobic003G179500--Sobic005G110535 Sobic003G179500--Sobic006G116500 Sobic004G047100 Sobic004G047100 Sobic003G179500--Sobic004G047100 Sobic002G290000 Sobic002G290000 Sobic005G110535--Sobic002G290000 Sobic005G110535--Sobic009G087000 Sobic005G110535--Sobic010G147700 Sobic005G110535--Sobic008G129200 Sobic005G110535--Sobic003G183700 Sobic005G110535--Sobic003G369200 Sobic005G110535--Sobic004G321400 Sobic005G110535--Sobic003G179500 Sobic005G110535--Sobic001G377700 Sobic008G129200--Sobic004G331600 Sobic008G129200--Sobic009G087000 Sobic008G129200--Sobic005G110535 Sobic001G456500 Sobic001G456500 Sobic008G129200--Sobic001G456500 Sobic008G129200--Sobic010G147700 Sobic008G129200--Sobic003G183700 Sobic001G083300 Sobic001G083300 Sobic008G129200--Sobic001G083300 Sobic010G054600 Sobic010G054600 Sobic008G129200--Sobic010G054600 Sobic008G129200--Sobic006G116500 Sobic004G321400--Sobic003G183700 Sobic004G321400--Sobic009G087000 Sobic004G321400--Sobic005G110535 Sobic004G321400--Sobic002G290000 Sobic004G321400--Sobic003G369200 Sobic004G321400--Sobic008G129200 Sobic004G095200 Sobic004G095200 Sobic004G321400--Sobic004G095200 Sobic009G172950 Sobic009G172950 Sobic004G321400--Sobic009G172950 Sobic004G321400--Sobic004G331600 Sobic010G147700--Sobic006G029300 Sobic010G147700--Sobic009G087000 Sobic010G147700--Sobic005G110535 Sobic010G147700--Sobic003G369200 Sobic007G168900 Sobic007G168900 Sobic010G147700--Sobic007G168900 Sobic010G147700--Sobic008G129200 Sobic010G147700--Sobic005G144600 Sobic010G147700--Sobic003G183700 Sobic003G201000 Sobic003G201000 Sobic010G147700--Sobic003G201000
Octagon: transcription factors


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