Gene annotation
Transcriptome id Sobic.003G369200.2
Synonym ICU2, Sb03g041040
Functional annotation POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed
UniProt A0A1W0W0M8
Pfam PF03104 PF08996 PF00136
Panther DB PTHR10322 PTHR10322:SF21
NCBI CDD -
KEGG Orthology K02320; DNA polymerase alpha subunit A
Gene Ontology GO:0008408; 3'-5' exonuclease activity GO:0006260DNA replication GO:0003887DNA-directed DNA polymerase activity GO:0001882nucleoside binding GO:0003677DNA binding GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT5G67100 : DNA-directed DNA polymerases
RAP-DB (Rice) LOC_Os01g64820.1 : POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed
MaizeGDB (Corn) Zm00025a026691
Brachypodium KQK10782 , KQK10783
Barley HORVU3Hr1G082930.40 , HORVU3Hr1G082930.41 , HORVU3Hr1G082930.42 , HORVU3Hr1G082930.43 , HORVU3Hr1G082930.44 , HORVU3Hr1G082930.45 , HORVU3Hr1G082930.46 , HORVU3Hr1G082930.47 , HORVU3Hr1G082930.48 , HORVU3Hr1G082930.49 , HORVU3Hr1G082930.68 , HORVU3Hr1G082930.62 , HORVU3Hr1G082930.63 , HORVU3Hr1G082930.60 , HORVU3Hr1G082930.61 , HORVU3Hr1G082930.66 , HORVU3Hr1G082930.67 , HORVU3Hr1G082930.64 , HORVU3Hr1G082930.65 , HORVU3Hr1G082930.39 , HORVU3Hr1G082930.19 , HORVU3Hr1G082930.18 , HORVU3Hr1G082930.17 , HORVU3Hr1G082930.16 , HORVU3Hr1G082930.15 , HORVU3Hr1G082930.14 , HORVU3Hr1G082930.13 , HORVU3Hr1G082930.12 , HORVU3Hr1G082930.11 , HORVU3Hr1G082930.10 , HORVU3Hr1G082930.7 , HORVU3Hr1G082930.6 , HORVU3Hr1G082930.5 , HORVU3Hr1G082930.4 , HORVU3Hr1G082930.3 , HORVU3Hr1G082930.2 , HORVU3Hr1G082930.1 , HORVU3Hr1G082930.9 , HORVU3Hr1G082930.8 , HORVU3Hr1G082930.31 , HORVU3Hr1G082930.30 , HORVU3Hr1G082930.33 , HORVU3Hr1G082930.32 , HORVU3Hr1G082930.35 , HORVU3Hr1G082930.34 , HORVU3Hr1G082930.37 , HORVU3Hr1G082930.36 , HORVU3Hr1G082930.38 , HORVU3Hr1G082930.26 , HORVU3Hr1G082930.27 , HORVU3Hr1G082930.24 , HORVU3Hr1G082930.25 , HORVU3Hr1G082930.22 , HORVU3Hr1G082930.23 , HORVU3Hr1G082930.20 , HORVU3Hr1G082930.21 , HORVU3Hr1G082930.28 , HORVU3Hr1G082930.29 , HORVU3Hr1G082930.53 , HORVU3Hr1G082930.52 , HORVU3Hr1G082930.51 , HORVU3Hr1G082930.50 , HORVU3Hr1G082930.57 , HORVU3Hr1G082930.56 , HORVU3Hr1G082930.55 , HORVU3Hr1G082930.54 , HORVU3Hr1G082930.59 , HORVU3Hr1G082930.58
Wheat TraesCS3D02G373200 , TraesCS3B02G412700 , TraesCS3B02G412600 , TraesCS3D02G373300 , TraesCS3A02G380100 , TraesCS3A02G380000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
2 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
3 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
4 Sobic.003G201000 WD domain, G-beta repeat domain containing protein, expressed -
5 Sobic.003G393100 chromosome segregation protein, putative, expressed K06674: structural maintenance of chromosome 2
6 Sobic.009G184200 RecF/RecN/SMC N terminal domain containing protein, expressed K06675: structural maintenance of chromosome 4
7 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
8 Sobic.006G029300 expressed protein K15505: DNA repair protein RAD5
9 Sobic.007G168900 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
10 Sobic.004G331600 MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed K02209: MCM5, DNA replication licensing factor MCM5
11 Sobic.004G321400 BRUSHY 1, putative, expressed -
12 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein
13 Sobic.001G398400 expressed protein -
14 Sobic.003G423600 expressed protein K06228: fused
15 Sobic.006G281400 expressed protein -
16 Sobic.005G000500 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
17 Sobic.002G204400 kinesin motor protein-related, putative, expressed K11498: centromeric protein E
18 Sobic.004G156200 POLE1 - Putative DNA polymerase epsilon catalytic subunit, expressed K02324: DNA polymerase epsilon subunit 1
19 Sobic.010G054600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribonucleoside-diphosphate reductase large subunit, putative, expressed K10807: ribonucleoside-diphosphate reductase subunit M1
20 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7


Gene co-expression network
sample Sobic003G369200 Sobic003G369200 Sobic010G147700 Sobic010G147700 Sobic003G369200--Sobic010G147700 Sobic005G110535 Sobic005G110535 Sobic003G369200--Sobic005G110535 Sobic009G087000 Sobic009G087000 Sobic003G369200--Sobic009G087000 Sobic003G201000 Sobic003G201000 Sobic003G369200--Sobic003G201000 Sobic003G393100 Sobic003G393100 Sobic003G369200--Sobic003G393100 Sobic009G184200 Sobic009G184200 Sobic003G369200--Sobic009G184200 Sobic003G183700 Sobic003G183700 Sobic003G369200--Sobic003G183700 Sobic006G029300 Sobic006G029300 Sobic003G369200--Sobic006G029300 Sobic007G168900 Sobic007G168900 Sobic003G369200--Sobic007G168900 Sobic010G147700--Sobic006G029300 Sobic010G147700--Sobic009G087000 Sobic010G147700--Sobic005G110535 Sobic010G147700--Sobic003G369200 Sobic010G147700--Sobic007G168900 Sobic008G129200 Sobic008G129200 Sobic010G147700--Sobic008G129200 Sobic005G144600 Sobic005G144600 Sobic010G147700--Sobic005G144600 Sobic010G147700--Sobic003G183700 Sobic010G147700--Sobic003G201000 Sobic002G290000 Sobic002G290000 Sobic005G110535--Sobic002G290000 Sobic005G110535--Sobic009G087000 Sobic005G110535--Sobic010G147700 Sobic005G110535--Sobic008G129200 Sobic005G110535--Sobic003G183700 Sobic005G110535--Sobic003G369200 Sobic004G321400 Sobic004G321400 Sobic005G110535--Sobic004G321400 Sobic003G179500 Sobic003G179500 Sobic005G110535--Sobic003G179500 Sobic001G377700 Sobic001G377700 Sobic005G110535--Sobic001G377700 Sobic009G087000--Sobic010G147700 Sobic009G087000--Sobic003G183700 Sobic009G087000--Sobic005G110535 Sobic009G087000--Sobic008G129200 Sobic009G087000--Sobic006G029300 Sobic009G087000--Sobic003G369200 Sobic009G087000--Sobic004G321400 Sobic004G331600 Sobic004G331600 Sobic009G087000--Sobic004G331600 Sobic009G087000--Sobic003G179500 Sobic003G201000--Sobic010G147700 Sobic003G201000--Sobic003G369200 Sobic003G201000--Sobic009G087000 Sobic003G444300 Sobic003G444300 Sobic003G201000--Sobic003G444300 Sobic003G201000--Sobic005G144600 Sobic010G054600 Sobic010G054600 Sobic003G201000--Sobic010G054600 Sobic003G201000--Sobic006G029300 Sobic003G201000--Sobic002G290000 Sobic003G201000--Sobic005G110535 Sobic003G393100--Sobic009G184200 Sobic002G204400 Sobic002G204400 Sobic003G393100--Sobic002G204400 Sobic003G393100--Sobic003G369200 Sobic001G398400 Sobic001G398400 Sobic003G393100--Sobic001G398400 Sobic008G148000 Sobic008G148000 Sobic003G393100--Sobic008G148000 Sobic006G281400 Sobic006G281400 Sobic003G393100--Sobic006G281400 Sobic008G070700 Sobic008G070700 Sobic003G393100--Sobic008G070700 Sobic007G007800 Sobic007G007800 Sobic003G393100--Sobic007G007800 Sobic003G393100--Sobic004G321400 Sobic009G184200--Sobic002G204400 Sobic010G105400 Sobic010G105400 Sobic009G184200--Sobic010G105400 Sobic009G184200--Sobic001G398400 Sobic009G184200--Sobic003G393100 Sobic010G129700 Sobic010G129700 Sobic009G184200--Sobic010G129700 Sobic003G032200 Sobic003G032200 Sobic009G184200--Sobic003G032200 Sobic001G170800 Sobic001G170800 Sobic009G184200--Sobic001G170800 Sobic009G184200--Sobic007G007800 Sobic003G260700 Sobic003G260700 Sobic009G184200--Sobic003G260700 Sobic006G051000 Sobic006G051000 Sobic003G183700--Sobic006G051000 Sobic003G183700--Sobic009G087000 Sobic006G195500 Sobic006G195500 Sobic003G183700--Sobic006G195500 Sobic010G103700 Sobic010G103700 Sobic003G183700--Sobic010G103700 Sobic003G183700--Sobic003G179500 Sobic003G183700--Sobic005G110535 Sobic003G183700--Sobic008G129200 Sobic003G183700--Sobic004G321400 Sobic003G183700--Sobic010G147700 Sobic006G029300--Sobic010G147700 Sobic006G029300--Sobic009G087000 Sobic006G029300--Sobic007G168900 Sobic006G029300--Sobic003G369200 Sobic003G294500 Sobic003G294500 Sobic006G029300--Sobic003G294500 Sobic006G029300--Sobic003G201000 Sobic001G029800 Sobic001G029800 Sobic006G029300--Sobic001G029800 Sobic006G029300--Sobic005G144600 Sobic006G029300--Sobic005G110535 Sobic005G000500 Sobic005G000500 Sobic007G168900--Sobic005G000500 Sobic007G168900--Sobic005G144600 Sobic004G271300 Sobic004G271300 Sobic007G168900--Sobic004G271300 Sobic001G177900 Sobic001G177900 Sobic007G168900--Sobic001G177900 Sobic003G314900 Sobic003G314900 Sobic007G168900--Sobic003G314900 Sobic007G168900--Sobic003G294500 Sobic007G168900--Sobic003G260700 Sobic010G008900 Sobic010G008900 Sobic007G168900--Sobic010G008900 Sobic007G168900--Sobic010G147700
Octagon: transcription factors


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