Gene annotation
Transcriptome id Sobic.006G029300.1
Synonym Sb06g003030
Functional annotation expressed protein
UniProt C5YD60
Pfam PF13920 PF08797 PF00271 PF00176
Panther DB PTHR10799 PTHR10799:SF779
NCBI CDD -
KEGG Orthology K15505; DNA repair protein RAD5
Gene Ontology GO:0016818; hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides GO:0008270zinc ion binding GO:0003676nucleic acid binding GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT5G43530 : Helicase protein with RING/U-box domain
RAP-DB (Rice) LOC_Os04g09800.1 : SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A, putative, expressed
MaizeGDB (Corn) Zm00025a030695
Brachypodium KQJ81446
Barley HORVU0Hr1G001880.11 , HORVU0Hr1G001880.10 , HORVU0Hr1G001880.13 , HORVU0Hr1G001880.12 , HORVU0Hr1G001880.15 , HORVU0Hr1G001880.14 , HORVU0Hr1G001880.17 , HORVU0Hr1G001880.16 , HORVU0Hr1G001880.19 , HORVU0Hr1G001880.18 , HORVU0Hr1G001880.5 , HORVU0Hr1G001880.4 , HORVU0Hr1G001880.7 , HORVU0Hr1G001880.6 , HORVU0Hr1G001880.1 , HORVU0Hr1G001880.3 , HORVU0Hr1G001880.2 , HORVU0Hr1G001880.9 , HORVU0Hr1G001880.8 , HORVU0Hr1G001880.20 , HORVU0Hr1G001880.21 , HORVU0Hr1G001880.22
Wheat TraesCS2D02G071800 , TraesCS2A02G072700 , TraesCS2B02G086700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
2 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
3 Sobic.007G168900 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
4 Sobic.003G369200 POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed K02320: DNA polymerase alpha subunit A
5 Sobic.003G294500 dynamin family protein, putative, expressed -
6 Sobic.003G201000 WD domain, G-beta repeat domain containing protein, expressed -
7 Sobic.001G029800 expressed protein -
8 Sobic.005G144600 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
9 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
10 Sobic.003G314900 flap endonuclease, putative, expressed K10746: exonuclease 1
11 Sobic.010G008900 kinesin motor domain containing protein, expressed K11498: centromeric protein E
12 Sobic.005G000500 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
13 Sobic.001G083300 transducin family protein, putative, expressed K02180: cell cycle arrest protein BUB3
14 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
15 Sobic.001G177900 Kinesin motor domain domain containing protein, expressed K10400: kinesin family member 15
16 Sobic.006G214000 expressed protein K00558: DNMT1, DNA (cytosine-5)-methyltransferase 1
17 Sobic.004G331600 MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed K02209: MCM5, DNA replication licensing factor MCM5
18 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
19 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein
20 Sobic.004G197400 expressed protein K00558: DNMT1, DNA (cytosine-5)-methyltransferase 1


Gene co-expression network
sample Sobic006G029300 Sobic006G029300 Sobic010G147700 Sobic010G147700 Sobic006G029300--Sobic010G147700 Sobic009G087000 Sobic009G087000 Sobic006G029300--Sobic009G087000 Sobic007G168900 Sobic007G168900 Sobic006G029300--Sobic007G168900 Sobic003G369200 Sobic003G369200 Sobic006G029300--Sobic003G369200 Sobic003G294500 Sobic003G294500 Sobic006G029300--Sobic003G294500 Sobic003G201000 Sobic003G201000 Sobic006G029300--Sobic003G201000 Sobic001G029800 Sobic001G029800 Sobic006G029300--Sobic001G029800 Sobic005G144600 Sobic005G144600 Sobic006G029300--Sobic005G144600 Sobic005G110535 Sobic005G110535 Sobic006G029300--Sobic005G110535 Sobic010G147700--Sobic006G029300 Sobic010G147700--Sobic009G087000 Sobic010G147700--Sobic005G110535 Sobic010G147700--Sobic003G369200 Sobic010G147700--Sobic007G168900 Sobic008G129200 Sobic008G129200 Sobic010G147700--Sobic008G129200 Sobic010G147700--Sobic005G144600 Sobic003G183700 Sobic003G183700 Sobic010G147700--Sobic003G183700 Sobic010G147700--Sobic003G201000 Sobic009G087000--Sobic010G147700 Sobic009G087000--Sobic003G183700 Sobic009G087000--Sobic005G110535 Sobic009G087000--Sobic008G129200 Sobic009G087000--Sobic006G029300 Sobic009G087000--Sobic003G369200 Sobic004G321400 Sobic004G321400 Sobic009G087000--Sobic004G321400 Sobic004G331600 Sobic004G331600 Sobic009G087000--Sobic004G331600 Sobic003G179500 Sobic003G179500 Sobic009G087000--Sobic003G179500 Sobic005G000500 Sobic005G000500 Sobic007G168900--Sobic005G000500 Sobic007G168900--Sobic005G144600 Sobic004G271300 Sobic004G271300 Sobic007G168900--Sobic004G271300 Sobic001G177900 Sobic001G177900 Sobic007G168900--Sobic001G177900 Sobic003G314900 Sobic003G314900 Sobic007G168900--Sobic003G314900 Sobic007G168900--Sobic003G294500 Sobic003G260700 Sobic003G260700 Sobic007G168900--Sobic003G260700 Sobic010G008900 Sobic010G008900 Sobic007G168900--Sobic010G008900 Sobic007G168900--Sobic010G147700 Sobic003G369200--Sobic010G147700 Sobic003G369200--Sobic005G110535 Sobic003G369200--Sobic009G087000 Sobic003G369200--Sobic003G201000 Sobic003G393100 Sobic003G393100 Sobic003G369200--Sobic003G393100 Sobic009G184200 Sobic009G184200 Sobic003G369200--Sobic009G184200 Sobic003G369200--Sobic003G183700 Sobic003G369200--Sobic006G029300 Sobic003G369200--Sobic007G168900 Sobic003G294500--Sobic005G144600 Sobic003G294500--Sobic007G168900 Sobic003G294500--Sobic003G314900 Sobic003G294500--Sobic001G177900 Sobic003G294500--Sobic005G000500 Sobic006G144300 Sobic006G144300 Sobic003G294500--Sobic006G144300 Sobic003G294500--Sobic010G008900 Sobic003G294500--Sobic001G029800 Sobic003G294500--Sobic010G147700 Sobic003G201000--Sobic010G147700 Sobic003G201000--Sobic003G369200 Sobic003G201000--Sobic009G087000 Sobic003G444300 Sobic003G444300 Sobic003G201000--Sobic003G444300 Sobic003G201000--Sobic005G144600 Sobic010G054600 Sobic010G054600 Sobic003G201000--Sobic010G054600 Sobic003G201000--Sobic006G029300 Sobic002G290000 Sobic002G290000 Sobic003G201000--Sobic002G290000 Sobic003G201000--Sobic005G110535 Sobic001G029800--Sobic010G008900 Sobic001G029800--Sobic003G294500 Sobic001G029800--Sobic001G177900 Sobic002G191000 Sobic002G191000 Sobic001G029800--Sobic002G191000 Sobic001G029800--Sobic007G168900 Sobic001G029800--Sobic003G314900 Sobic001G029800--Sobic006G029300 Sobic001G029800--Sobic005G000500 Sobic001G029800--Sobic010G147700 Sobic005G144600--Sobic007G168900 Sobic010G105400 Sobic010G105400 Sobic005G144600--Sobic010G105400 Sobic005G144600--Sobic003G294500 Sobic005G144600--Sobic005G000500 Sobic005G144600--Sobic003G314900 Sobic005G144600--Sobic001G177900 Sobic004G047100 Sobic004G047100 Sobic005G144600--Sobic004G047100 Sobic005G144600--Sobic004G271300 Sobic005G144600--Sobic003G179500 Sobic005G110535--Sobic002G290000 Sobic005G110535--Sobic009G087000 Sobic005G110535--Sobic010G147700 Sobic005G110535--Sobic008G129200 Sobic005G110535--Sobic003G183700 Sobic005G110535--Sobic003G369200 Sobic005G110535--Sobic004G321400 Sobic005G110535--Sobic003G179500 Sobic001G377700 Sobic001G377700 Sobic005G110535--Sobic001G377700
Octagon: transcription factors


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