Gene annotation
Transcriptome id Sobic.004G197400.1
Synonym CMT3, Sb04g024430
Functional annotation expressed protein
UniProt A0A194YQQ6
Pfam PF01426 PF00385 PF00145
Panther DB PTHR10629 PTHR10629:SF28
NCBI CDD -
KEGG Orthology K00558; DNMT1, DNA (cytosine-5)-methyltransferase 1
Gene Ontology GO:0003682; chromatin binding


Orthologs (automatic annotation)
TAIR AT1G69770 : chromomethylase 3
RAP-DB (Rice) LOC_Os03g12570.1 : expressed protein
MaizeGDB (Corn) Zm00025a014300
Brachypodium KQJ98774
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G294500 dynamin family protein, putative, expressed -
2 Sobic.005G144600 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
3 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
4 Sobic.006G116500 expressed protein -
5 Sobic.010G274000 cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
6 Sobic.001G070300 expressed protein -
7 Sobic.001G078600 CAMK_CAMK_like_Aur_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
8 Sobic.004G355500 RPA2A - Putative single-stranded DNA binding complex subunit 2, expressed K10739: RFA2, replication factor A2
9 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
10 Sobic.001G142000 deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed K01520: dut, dUTP pyrophosphatase
11 Sobic.003G314900 flap endonuclease, putative, expressed K10746: exonuclease 1
12 Sobic.006G029300 expressed protein K15505: DNA repair protein RAD5
13 Sobic.004G257600 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
14 Sobic.007G168900 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
15 Sobic.003G201000 WD domain, G-beta repeat domain containing protein, expressed -
16 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
17 Sobic.010G054600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribonucleoside-diphosphate reductase large subunit, putative, expressed K10807: ribonucleoside-diphosphate reductase subunit M1
18 Sobic.003G135400 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
19 Sobic.006G144300 expressed protein -
20 Sobic.001G177900 Kinesin motor domain domain containing protein, expressed K10400: kinesin family member 15


Gene co-expression network
sample Sobic004G197400 Sobic004G197400 Sobic003G294500 Sobic003G294500 Sobic004G197400--Sobic003G294500 Sobic005G144600 Sobic005G144600 Sobic004G197400--Sobic005G144600 Sobic001G456500 Sobic001G456500 Sobic004G197400--Sobic001G456500 Sobic006G116500 Sobic006G116500 Sobic004G197400--Sobic006G116500 Sobic010G274000 Sobic010G274000 Sobic004G197400--Sobic010G274000 Sobic001G070300 Sobic001G070300 Sobic004G197400--Sobic001G070300 Sobic001G078600 Sobic001G078600 Sobic004G197400--Sobic001G078600 Sobic004G355500 Sobic004G355500 Sobic004G197400--Sobic004G355500 Sobic010G147700 Sobic010G147700 Sobic004G197400--Sobic010G147700 Sobic003G294500--Sobic005G144600 Sobic007G168900 Sobic007G168900 Sobic003G294500--Sobic007G168900 Sobic003G314900 Sobic003G314900 Sobic003G294500--Sobic003G314900 Sobic001G177900 Sobic001G177900 Sobic003G294500--Sobic001G177900 Sobic005G000500 Sobic005G000500 Sobic003G294500--Sobic005G000500 Sobic006G144300 Sobic006G144300 Sobic003G294500--Sobic006G144300 Sobic010G008900 Sobic010G008900 Sobic003G294500--Sobic010G008900 Sobic001G029800 Sobic001G029800 Sobic003G294500--Sobic001G029800 Sobic003G294500--Sobic010G147700 Sobic005G144600--Sobic007G168900 Sobic010G105400 Sobic010G105400 Sobic005G144600--Sobic010G105400 Sobic005G144600--Sobic003G294500 Sobic005G144600--Sobic005G000500 Sobic005G144600--Sobic003G314900 Sobic005G144600--Sobic001G177900 Sobic004G047100 Sobic004G047100 Sobic005G144600--Sobic004G047100 Sobic004G271300 Sobic004G271300 Sobic005G144600--Sobic004G271300 Sobic003G179500 Sobic003G179500 Sobic005G144600--Sobic003G179500 Sobic001G456500--Sobic006G116500 Sobic004G331600 Sobic004G331600 Sobic001G456500--Sobic004G331600 Sobic001G142000 Sobic001G142000 Sobic001G456500--Sobic001G142000 Sobic001G083300 Sobic001G083300 Sobic001G456500--Sobic001G083300 Sobic008G129200 Sobic008G129200 Sobic001G456500--Sobic008G129200 Sobic002G223900 Sobic002G223900 Sobic001G456500--Sobic002G223900 Sobic001G169800 Sobic001G169800 Sobic001G456500--Sobic001G169800 Sobic003G444300 Sobic003G444300 Sobic001G456500--Sobic003G444300 Sobic001G456500--Sobic004G355500 Sobic006G116500--Sobic001G456500 Sobic006G116500--Sobic004G355500 Sobic006G116500--Sobic001G169800 Sobic006G116500--Sobic001G070300 Sobic006G116500--Sobic003G179500 Sobic006G116500--Sobic008G129200 Sobic006G116500--Sobic002G223900 Sobic006G116500--Sobic004G331600 Sobic006G116500--Sobic004G047100 Sobic010G274000--Sobic001G070300 Sobic009G181500 Sobic009G181500 Sobic010G274000--Sobic009G181500 Sobic010G274000--Sobic005G144600 Sobic002G191000 Sobic002G191000 Sobic010G274000--Sobic002G191000 Sobic010G274000--Sobic001G078600 Sobic010G274000--Sobic004G197400 Sobic007G100600 Sobic007G100600 Sobic010G274000--Sobic007G100600 Sobic006G102900 Sobic006G102900 Sobic010G274000--Sobic006G102900 Sobic010G274000--Sobic006G116500 Sobic001G070300--Sobic010G274000 Sobic001G070300--Sobic007G100600 Sobic001G070300--Sobic006G116500 Sobic001G070300--Sobic002G191000 Sobic001G070300--Sobic009G181500 Sobic001G070300--Sobic004G197400 Sobic001G070300--Sobic005G144600 Sobic001G070300--Sobic001G142000 Sobic001G070300--Sobic004G047100 Sobic001G078600--Sobic006G102900 Sobic002G426800 Sobic002G426800 Sobic001G078600--Sobic002G426800 Sobic001G078600--Sobic010G274000 Sobic001G078600--Sobic005G144600 Sobic001G078600--Sobic004G197400 Sobic004G285900 Sobic004G285900 Sobic001G078600--Sobic004G285900 Sobic001G078600--Sobic006G116500 Sobic001G528600 Sobic001G528600 Sobic001G078600--Sobic001G528600 Sobic007G154500 Sobic007G154500 Sobic001G078600--Sobic007G154500 Sobic004G355500--Sobic006G116500 Sobic004G355500--Sobic001G456500 Sobic007G152900 Sobic007G152900 Sobic004G355500--Sobic007G152900 Sobic010G103700 Sobic010G103700 Sobic004G355500--Sobic010G103700 Sobic004G355500--Sobic001G169800 Sobic004G355500--Sobic004G197400 Sobic009G088200 Sobic009G088200 Sobic004G355500--Sobic009G088200 Sobic001G103000 Sobic001G103000 Sobic004G355500--Sobic001G103000 Sobic004G355500--Sobic008G129200 Sobic006G029300 Sobic006G029300 Sobic010G147700--Sobic006G029300 Sobic009G087000 Sobic009G087000 Sobic010G147700--Sobic009G087000 Sobic005G110535 Sobic005G110535 Sobic010G147700--Sobic005G110535 Sobic003G369200 Sobic003G369200 Sobic010G147700--Sobic003G369200 Sobic010G147700--Sobic007G168900 Sobic010G147700--Sobic008G129200 Sobic010G147700--Sobic005G144600 Sobic003G183700 Sobic003G183700 Sobic010G147700--Sobic003G183700 Sobic003G201000 Sobic003G201000 Sobic010G147700--Sobic003G201000
Octagon: transcription factors


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