Gene annotation
Transcriptome id Sobic.003G135400.2,Sobic.003G135400.1
Synonym Sb03g011510, TUB6
Functional annotation tubulin/FtsZ domain containing protein, putative, expressed
UniProt A0A1B6Q2X9
Pfam PF03953 PF00091
Panther DB PTHR11588 PTHR11588:SF114
NCBI CDD -
KEGG Orthology K07375; tubulin beta
Gene Ontology GO:0003924; GTPase activity GO:0007017microtubule-based process GO:0005874microtubule


Orthologs (automatic annotation)
TAIR AT5G12250 : beta-6 tubulin
RAP-DB (Rice) LOC_Os01g18050.1 : tubulin/FtsZ domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a000132 , Zm00025a030432 , Zm00025a012119 , Zm00025a037439 , Zm00025a024856 , Zm00025a039825 , Zm00025a008433 , Zm00025a024200 , Zm00025a001989 , Zm00025a041941 , Zm00025a008427 , Zm00025a016660 , Zm00025a035181 , Zm00025a004646 , Zm00025a036766 , Zm00025a007533 , Zm00025a017188 , Zm00025a027156 , Zm00025a014491 , Zm00025a018766 , Zm00025a019054 , Zm00025a051791 , Zm00025a040093 , Zm00025a008163
Brachypodium KQK17085 , KQK13880 , KQK12908 , KQK24113 , KQK06257 , KQJ93503 , KQK05638 , KQK03976
Barley HORVU3Hr1G078940.3 , HORVU3Hr1G078940.2 , HORVU3Hr1G078940.1 , HORVU3Hr1G078940.7 , HORVU3Hr1G078940.6 , HORVU3Hr1G078940.5 , HORVU3Hr1G078940.4 , HORVU1Hr1G068170.1 , HORVU1Hr1G068170.3 , HORVU1Hr1G068170.2 , HORVU0Hr1G026030.4 , HORVU0Hr1G026030.3 , HORVU0Hr1G026030.2 , HORVU1Hr1G064870.4 , HORVU1Hr1G064870.5 , HORVU1Hr1G064870.6 , HORVU1Hr1G064870.7 , HORVU1Hr1G064870.1 , HORVU1Hr1G064870.2 , HORVU1Hr1G064870.3 , HORVU1Hr1G064870.8 , HORVU1Hr1G064870.9 , HORVU4Hr1G087740.1 , HORVU4Hr1G087740.3 , HORVU4Hr1G087740.4 , HORVU4Hr1G002530.1 , HORVU4Hr1G002530.2 , HORVU4Hr1G002530.4 , HORVU4Hr1G002530.5 , HORVU4Hr1G002530.6 , HORVU4Hr1G087740.5 , HORVU4Hr1G087740.2 , HORVU5Hr1G100900.1 , HORVU5Hr1G100900.3 , HORVU5Hr1G100900.2 , HORVU5Hr1G100900.5 , HORVU5Hr1G100900.4 , HORVU5Hr1G100900.6 , HORVU7Hr1G107100.4 , HORVU7Hr1G107100.5 , HORVU7Hr1G107100.2 , HORVU7Hr1G107100.3 , HORVU7Hr1G107100.1 , HORVU4Hr1G002530.3 , HORVU4Hr1G002530.7 , HORVU6Hr1G027620.5 , HORVU6Hr1G027620.4 , HORVU6Hr1G027620.3 , HORVU6Hr1G027620.2 , HORVU6Hr1G027620.1
Wheat TraesCS4D02G015400 , TraesCS7A02G466600 , TraesCS4B02G017100 , TraesCS3B02G363500 , TraesCS6D02G130500 , TraesCS6D02G130500 , TraesCS4A02G296600 , TraesCS1A02G309700 , TraesCS1A02G142800 , TraesCS1A02G142800 , TraesCS1A02G142800 , TraesCS5A02G443500 , TraesCS5A02G416400 , TraesCS5A02G416400 , TraesCS1A02G142800 , TraesCS1D02G258800 , TraesCS1B02G269400 , TraesCS5D02G424100 , TraesCS1A02G437700 , TraesCS1A02G437700 , TraesCS6B02G169300 , TraesCS6B02G169300 , TraesCS4B02G366500 , TraesCS5A02G069700 , TraesCS5A02G069700 , TraesCS5A02G069700 , TraesCS3A02G333300 , TraesCS5B02G418700 , TraesCS5A02G069800 , TraesCS5A02G069800 , TraesCS5A02G069800 , TraesCS5A02G534300 , TraesCS5A02G069800 , TraesCS3D02G326900 , TraesCSU02G137900 , TraesCS1A02G258800 , TraesCS1D02G309200 , TraesCS7D02G454200
Populus PNS98971 , PNT13773 , PNT29533 , PNT29532 , PNT29534 , PNT56452 , PNT30710 , PNS97627 , PNS98995 , PNT56929 , PNT56931 , PNT56930 , PNT56932 , PNT19996 , PNT19997 , PNT45227 , PNT19995 , PNT30708 , PNT30709


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cDNA sequences
Sobic.003G135400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G410600 exostosin family domain containing protein, expressed -
2 Sobic.001G078600 CAMK_CAMK_like_Aur_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
3 Sobic.003G294500 dynamin family protein, putative, expressed -
4 Sobic.004G197400 expressed protein K00558: DNMT1, DNA (cytosine-5)-methyltransferase 1
5 Sobic.008G141200 DUF1336 domain containing protein, expressed -
6 Sobic.005G144600 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
7 Sobic.007G219400 expressed protein -
8 Sobic.001G103000 DNA binding protein, putative, expressed -
9 Sobic.005G047100 actin, putative, expressed K10355: actin, other eukaryote
10 Sobic.004G066900 protein kinase family protein, putative, expressed -
11 Sobic.003G201000 WD domain, G-beta repeat domain containing protein, expressed -
12 Sobic.010G274000 cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
13 Sobic.004G355500 RPA2A - Putative single-stranded DNA binding complex subunit 2, expressed K10739: RFA2, replication factor A2
14 Sobic.009G181500 Up-reguralion under heat(PubMedID : 24916767)@cyclin, putative, expressed -
15 Sobic.009G189200 secretory carrier-associated membrane protein, putative, expressed -
16 Sobic.003G420100 RNA recognition motif containing protein, putative, expressed K13207: CUGBP, BRUNOL, CUG-BP- and ETR3-like factor
17 Sobic.006G116500 expressed protein -
18 Sobic.002G426800 zinc finger, C3HC4 type domain containing protein, expressed -
19 Sobic.003G314900 flap endonuclease, putative, expressed K10746: exonuclease 1
20 Sobic.003G247600 serine/threonine-protein kinase, putative, expressed -


Gene co-expression network
sample Sobic003G135400 Sobic003G135400 Sobic003G410600 Sobic003G410600 Sobic003G135400--Sobic003G410600 Sobic001G078600 Sobic001G078600 Sobic003G135400--Sobic001G078600 Sobic003G294500 Sobic003G294500 Sobic003G135400--Sobic003G294500 Sobic004G197400 Sobic004G197400 Sobic003G135400--Sobic004G197400 Sobic008G141200 Sobic008G141200 Sobic003G135400--Sobic008G141200 Sobic005G144600 Sobic005G144600 Sobic003G135400--Sobic005G144600 Sobic007G219400 Sobic007G219400 Sobic003G135400--Sobic007G219400 Sobic001G103000 Sobic001G103000 Sobic003G135400--Sobic001G103000 Sobic005G047100 Sobic005G047100 Sobic003G135400--Sobic005G047100 Sobic003G410600--Sobic003G294500 Sobic003G013000 Sobic003G013000 Sobic003G410600--Sobic003G013000 Sobic003G410600--Sobic005G144600 Sobic001G177900 Sobic001G177900 Sobic003G410600--Sobic001G177900 Sobic003G410600--Sobic003G135400 Sobic003G314900 Sobic003G314900 Sobic003G410600--Sobic003G314900 Sobic007G168900 Sobic007G168900 Sobic003G410600--Sobic007G168900 Sobic010G008900 Sobic010G008900 Sobic003G410600--Sobic010G008900 Sobic001G029800 Sobic001G029800 Sobic003G410600--Sobic001G029800 Sobic006G102900 Sobic006G102900 Sobic001G078600--Sobic006G102900 Sobic002G426800 Sobic002G426800 Sobic001G078600--Sobic002G426800 Sobic010G274000 Sobic010G274000 Sobic001G078600--Sobic010G274000 Sobic001G078600--Sobic005G144600 Sobic001G078600--Sobic004G197400 Sobic004G285900 Sobic004G285900 Sobic001G078600--Sobic004G285900 Sobic006G116500 Sobic006G116500 Sobic001G078600--Sobic006G116500 Sobic001G528600 Sobic001G528600 Sobic001G078600--Sobic001G528600 Sobic007G154500 Sobic007G154500 Sobic001G078600--Sobic007G154500 Sobic003G294500--Sobic005G144600 Sobic003G294500--Sobic007G168900 Sobic003G294500--Sobic003G314900 Sobic003G294500--Sobic001G177900 Sobic005G000500 Sobic005G000500 Sobic003G294500--Sobic005G000500 Sobic006G144300 Sobic006G144300 Sobic003G294500--Sobic006G144300 Sobic003G294500--Sobic010G008900 Sobic003G294500--Sobic001G029800 Sobic010G147700 Sobic010G147700 Sobic003G294500--Sobic010G147700 Sobic004G197400--Sobic003G294500 Sobic004G197400--Sobic005G144600 Sobic001G456500 Sobic001G456500 Sobic004G197400--Sobic001G456500 Sobic004G197400--Sobic006G116500 Sobic004G197400--Sobic010G274000 Sobic001G070300 Sobic001G070300 Sobic004G197400--Sobic001G070300 Sobic004G197400--Sobic001G078600 Sobic004G355500 Sobic004G355500 Sobic004G197400--Sobic004G355500 Sobic004G197400--Sobic010G147700 Sobic008G141200--Sobic003G135400 Sobic009G206500 Sobic009G206500 Sobic008G141200--Sobic009G206500 Sobic003G420100 Sobic003G420100 Sobic008G141200--Sobic003G420100 Sobic009G059500 Sobic009G059500 Sobic008G141200--Sobic009G059500 Sobic003G247600 Sobic003G247600 Sobic008G141200--Sobic003G247600 Sobic010G131400 Sobic010G131400 Sobic008G141200--Sobic010G131400 Sobic009G189200 Sobic009G189200 Sobic008G141200--Sobic009G189200 Sobic009G214100 Sobic009G214100 Sobic008G141200--Sobic009G214100 Sobic004G066900 Sobic004G066900 Sobic008G141200--Sobic004G066900 Sobic005G144600--Sobic007G168900 Sobic010G105400 Sobic010G105400 Sobic005G144600--Sobic010G105400 Sobic005G144600--Sobic003G294500 Sobic005G144600--Sobic005G000500 Sobic005G144600--Sobic003G314900 Sobic005G144600--Sobic001G177900 Sobic004G047100 Sobic004G047100 Sobic005G144600--Sobic004G047100 Sobic004G271300 Sobic004G271300 Sobic005G144600--Sobic004G271300 Sobic003G179500 Sobic003G179500 Sobic005G144600--Sobic003G179500 Sobic007G219400--Sobic003G135400 Sobic001G230300 Sobic001G230300 Sobic007G219400--Sobic001G230300 Sobic003G328500 Sobic003G328500 Sobic007G219400--Sobic003G328500 Sobic003G102000 Sobic003G102000 Sobic007G219400--Sobic003G102000 Sobic007G100600 Sobic007G100600 Sobic007G219400--Sobic007G100600 Sobic007G219400--Sobic002G426800 Sobic004G257600 Sobic004G257600 Sobic007G219400--Sobic004G257600 Sobic007G219400--Sobic010G274000 Sobic009G181500 Sobic009G181500 Sobic007G219400--Sobic009G181500 Sobic001G103000--Sobic010G274000 Sobic001G103000--Sobic004G355500 Sobic002G191000 Sobic002G191000 Sobic001G103000--Sobic002G191000 Sobic007G139500 Sobic007G139500 Sobic001G103000--Sobic007G139500 Sobic001G103000--Sobic003G135400 Sobic001G103000--Sobic003G410600 Sobic001G103000--Sobic004G197400 Sobic007G152900 Sobic007G152900 Sobic001G103000--Sobic007G152900 Sobic001G103000--Sobic006G116500 Sobic004G297950 Sobic004G297950 Sobic005G047100--Sobic004G297950 Sobic005G047100--Sobic003G247600 Sobic007G225400 Sobic007G225400 Sobic005G047100--Sobic007G225400 Sobic004G170900 Sobic004G170900 Sobic005G047100--Sobic004G170900 Sobic001G521300 Sobic001G521300 Sobic005G047100--Sobic001G521300 Sobic003G321400 Sobic003G321400 Sobic005G047100--Sobic003G321400 Sobic004G170800 Sobic004G170800 Sobic005G047100--Sobic004G170800 Sobic005G047100--Sobic003G135400 Sobic005G047100--Sobic003G420100
Octagon: transcription factors


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