Gene annotation
Transcriptome id Sobic.003G420100.2,Sobic.003G420100.1
Synonym RBP-DR1, Sb03g045340, AtRBP-DR1
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1B6Q847 , A0A1B6Q841
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF414
NCBI CDD KOG0144; RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
KEGG Orthology K13207; CUGBP, BRUNOL, CUG-BP- and ETR3-like factor
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G03110 : RNA-binding protein-defense related 1
RAP-DB (Rice) LOC_Os01g71200.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a026091 , Zm00025a039171
Brachypodium KQK06606 , PNT71419 , PNT73564 , PNT73563 , KQK11449
Barley HORVU1Hr1G058020.12 , HORVU1Hr1G058020.13 , HORVU1Hr1G058020.10 , HORVU1Hr1G058020.11 , HORVU3Hr1G101930.11 , HORVU3Hr1G101930.10 , HORVU3Hr1G101930.12 , HORVU1Hr1G058020.1 , HORVU1Hr1G058020.2 , HORVU1Hr1G058020.6 , HORVU3Hr1G101930.3 , HORVU3Hr1G101930.2 , HORVU3Hr1G101930.5 , HORVU3Hr1G101930.7 , HORVU3Hr1G101930.6 , HORVU3Hr1G101930.9 , HORVU3Hr1G101930.8 , HORVU1Hr1G058020.3 , HORVU1Hr1G058020.4 , HORVU1Hr1G058020.5 , HORVU1Hr1G058020.7 , HORVU1Hr1G058020.8 , HORVU1Hr1G058020.9
Wheat TraesCS1B02G247800 , TraesCSU02G040800 , TraesCS1A02G236000 , TraesCS1A02G236000 , TraesCS1A02G236000 , TraesCS3B02G517100 , TraesCS3A02G473900 , TraesCS3A02G473900 , TraesCS1D02G236300
Populus PNS22883 , PNS22885 , PNS22884 , PNT50913 , PNT50912


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G247600 serine/threonine-protein kinase, putative, expressed -
2 Sobic.004G233700 glycosyl hydrolase family 3 protein, putative, expressed -
3 Sobic.009G242501 - -
4 Sobic.007G208100 heavy metal-associated domain containing protein, expressed -
5 Sobic.004G286700 GDSL-like lipase/acylhydrolase, putative, expressed -
6 Sobic.005G047100 actin, putative, expressed K10355: actin, other eukaryote
7 Sobic.008G141200 DUF1336 domain containing protein, expressed -
8 Sobic.004G066900 protein kinase family protein, putative, expressed -
9 Sobic.003G135400 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
10 Sobic.003G410600 exostosin family domain containing protein, expressed -
11 Sobic.003G003700 ABIL2, putative, expressed -
12 Sobic.009G021700 expressed protein -
13 Sobic.010G104400 cysteine-rich repeat secretory protein precursor, putative, expressed -
14 Sobic.003G294500 dynamin family protein, putative, expressed -
15 Sobic.010G216600 expressed protein -
16 Sobic.009G206500 respiratory burst oxidase, putative, expressed K13447: respiratory burst oxidase
17 Sobic.002G016400 monocopper oxidase, putative, expressed -
18 Sobic.002G034301 - -
19 Sobic.005G144600 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
20 Sobic.006G236700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1


Gene co-expression network
sample Sobic003G420100 Sobic003G420100 Sobic003G247600 Sobic003G247600 Sobic003G420100--Sobic003G247600 Sobic004G233700 Sobic004G233700 Sobic003G420100--Sobic004G233700 Sobic009G242501 Sobic009G242501 Sobic003G420100--Sobic009G242501 Sobic007G208100 Sobic007G208100 Sobic003G420100--Sobic007G208100 Sobic004G286700 Sobic004G286700 Sobic003G420100--Sobic004G286700 Sobic005G047100 Sobic005G047100 Sobic003G420100--Sobic005G047100 Sobic008G141200 Sobic008G141200 Sobic003G420100--Sobic008G141200 Sobic004G066900 Sobic004G066900 Sobic003G420100--Sobic004G066900 Sobic003G135400 Sobic003G135400 Sobic003G420100--Sobic003G135400 Sobic003G247600--Sobic005G047100 Sobic003G247600--Sobic003G420100 Sobic003G247600--Sobic004G066900 Sobic003G247600--Sobic007G208100 Sobic003G247600--Sobic008G141200 Sobic003G247600--Sobic003G135400 Sobic003G052900 Sobic003G052900 Sobic003G247600--Sobic003G052900 Sobic003G345700 Sobic003G345700 Sobic003G247600--Sobic003G345700 Sobic006G119000 Sobic006G119000 Sobic003G247600--Sobic006G119000 Sobic009G208900 Sobic009G208900 Sobic004G233700--Sobic009G208900 Sobic006G105600 Sobic006G105600 Sobic004G233700--Sobic006G105600 Sobic005G025900 Sobic005G025900 Sobic004G233700--Sobic005G025900 Sobic004G233700--Sobic003G420100 Sobic002G142200 Sobic002G142200 Sobic004G233700--Sobic002G142200 Sobic005G144600 Sobic005G144600 Sobic004G233700--Sobic005G144600 Sobic007G113300 Sobic007G113300 Sobic004G233700--Sobic007G113300 Sobic007G168900 Sobic007G168900 Sobic004G233700--Sobic007G168900 Sobic002G296000 Sobic002G296000 Sobic004G233700--Sobic002G296000 Sobic009G242501--Sobic003G420100 Sobic009G021700 Sobic009G021700 Sobic009G242501--Sobic009G021700 Sobic010G216600 Sobic010G216600 Sobic009G242501--Sobic010G216600 Sobic004G170900 Sobic004G170900 Sobic009G242501--Sobic004G170900 Sobic008G039800 Sobic008G039800 Sobic009G242501--Sobic008G039800 Sobic009G242501--Sobic007G208100 Sobic003G277200 Sobic003G277200 Sobic009G242501--Sobic003G277200 Sobic009G242501--Sobic004G233700 Sobic003G013000 Sobic003G013000 Sobic009G242501--Sobic003G013000 Sobic005G231300 Sobic005G231300 Sobic007G208100--Sobic005G231300 Sobic002G016400 Sobic002G016400 Sobic007G208100--Sobic002G016400 Sobic003G296500 Sobic003G296500 Sobic007G208100--Sobic003G296500 Sobic006G149300 Sobic006G149300 Sobic007G208100--Sobic006G149300 Sobic002G034301 Sobic002G034301 Sobic007G208100--Sobic002G034301 Sobic007G208100--Sobic003G420100 Sobic010G104400 Sobic010G104400 Sobic007G208100--Sobic010G104400 Sobic007G208100--Sobic003G247600 Sobic001G514300 Sobic001G514300 Sobic007G208100--Sobic001G514300 Sobic004G286700--Sobic003G420100 Sobic001G468500 Sobic001G468500 Sobic004G286700--Sobic001G468500 Sobic003G410600 Sobic003G410600 Sobic004G286700--Sobic003G410600 Sobic004G286700--Sobic007G113300 Sobic007G094400 Sobic007G094400 Sobic004G286700--Sobic007G094400 Sobic003G017500 Sobic003G017500 Sobic004G286700--Sobic003G017500 Sobic004G286700--Sobic004G233700 Sobic004G286700--Sobic009G242501 Sobic004G286700--Sobic009G021700 Sobic004G297950 Sobic004G297950 Sobic005G047100--Sobic004G297950 Sobic005G047100--Sobic003G247600 Sobic007G225400 Sobic007G225400 Sobic005G047100--Sobic007G225400 Sobic005G047100--Sobic004G170900 Sobic001G521300 Sobic001G521300 Sobic005G047100--Sobic001G521300 Sobic003G321400 Sobic003G321400 Sobic005G047100--Sobic003G321400 Sobic004G170800 Sobic004G170800 Sobic005G047100--Sobic004G170800 Sobic005G047100--Sobic003G135400 Sobic005G047100--Sobic003G420100 Sobic008G141200--Sobic003G135400 Sobic009G206500 Sobic009G206500 Sobic008G141200--Sobic009G206500 Sobic008G141200--Sobic003G420100 Sobic009G059500 Sobic009G059500 Sobic008G141200--Sobic009G059500 Sobic008G141200--Sobic003G247600 Sobic010G131400 Sobic010G131400 Sobic008G141200--Sobic010G131400 Sobic009G189200 Sobic009G189200 Sobic008G141200--Sobic009G189200 Sobic009G214100 Sobic009G214100 Sobic008G141200--Sobic009G214100 Sobic008G141200--Sobic004G066900 Sobic004G066900--Sobic003G247600 Sobic004G066900--Sobic003G135400 Sobic004G066900--Sobic003G420100 Sobic004G066900--Sobic008G141200 Sobic001G260701 Sobic001G260701 Sobic004G066900--Sobic001G260701 Sobic004G066900--Sobic005G047100 Sobic001G382700 Sobic001G382700 Sobic004G066900--Sobic001G382700 Sobic004G066900--Sobic010G216600 Sobic004G066900--Sobic009G242501 Sobic003G135400--Sobic003G410600 Sobic001G078600 Sobic001G078600 Sobic003G135400--Sobic001G078600 Sobic003G294500 Sobic003G294500 Sobic003G135400--Sobic003G294500 Sobic004G197400 Sobic004G197400 Sobic003G135400--Sobic004G197400 Sobic003G135400--Sobic008G141200 Sobic003G135400--Sobic005G144600 Sobic007G219400 Sobic007G219400 Sobic003G135400--Sobic007G219400 Sobic001G103000 Sobic001G103000 Sobic003G135400--Sobic001G103000 Sobic003G135400--Sobic005G047100
Octagon: transcription factors


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