Gene annotation
Transcriptome id Sobic.010G054600.1
Synonym ATRNR1, CLS8, Sb10g004780, RNR1, R1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ribonucleoside-diphosphate reductase large subunit, putative, expressed
UniProt C5Z4Z4
Pfam PF03477 PF00317 PF02867
Panther DB PTHR11573 PTHR11573:SF16
NCBI CDD -
KEGG Orthology K10807; ribonucleoside-diphosphate reductase subunit M1
Gene Ontology GO:0006260; DNA replication GO:0005524ATP binding GO:0004748ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor


Orthologs (automatic annotation)
TAIR AT2G21790 : ribonucleotide reductase 1
RAP-DB (Rice) LOC_Os06g07210.1 : ribonucleoside-diphosphate reductase large subunit, putative, expressed
MaizeGDB (Corn) Zm00025a049893 , Zm00025a041661
Brachypodium KQK01220 , KQK19416
Barley HORVU6Hr1G087960.2 , HORVU6Hr1G087960.3 , HORVU6Hr1G087960.1 , HORVU6Hr1G087960.6 , HORVU6Hr1G087960.7 , HORVU6Hr1G087960.4 , HORVU6Hr1G087960.5 , HORVU6Hr1G087960.8 , HORVU6Hr1G087960.9 , HORVU6Hr1G087960.10 , HORVU6Hr1G087960.11 , HORVU6Hr1G087960.12 , HORVU6Hr1G087960.13 , HORVU6Hr1G087960.14 , HORVU6Hr1G087960.15 , HORVU6Hr1G087960.16 , HORVU6Hr1G087960.17 , HORVU6Hr1G087960.18 , HORVU6Hr1G087960.19 , HORVU6Hr1G087960.27 , HORVU6Hr1G087960.26 , HORVU7Hr1G027430.2 , HORVU6Hr1G087960.23 , HORVU7Hr1G088360.1 , HORVU7Hr1G088360.2 , HORVU6Hr1G087960.25 , HORVU6Hr1G087960.24 , HORVU7Hr1G027430.5 , HORVU7Hr1G027430.4 , HORVU7Hr1G027430.3 , HORVU6Hr1G087960.20 , HORVU7Hr1G027430.1 , HORVU6Hr1G087960.22 , HORVU7Hr1G027430.9 , HORVU7Hr1G027430.8 , HORVU2Hr1G065760.1 , HORVU3Hr1G089710.1 , HORVU6Hr1G014380.1 , HORVU5Hr1G122260.1 , HORVU7Hr1G027430.7 , HORVU7Hr1G027430.19 , HORVU7Hr1G027430.17 , HORVU7Hr1G027430.16 , HORVU7Hr1G027430.15 , HORVU7Hr1G027430.14 , HORVU7Hr1G027430.13 , HORVU7Hr1G027430.12 , HORVU7Hr1G027430.11 , HORVU7Hr1G027430.10 , HORVU7Hr1G027430.6 , HORVU2Hr1G013960.1 , HORVU3Hr1G022140.1 , HORVU5Hr1G030020.1 , HORVU4Hr1G004020.1
Wheat TraesCS5D02G335400 , TraesCS4B02G149200 , TraesCS6D02G357100 , TraesCS7D02G130500 , TraesCS7D02G130500 , TraesCS7A02G131200 , TraesCS7A02G131200 , TraesCS7B02G031500 , TraesCS7B02G031500 , TraesCS6B02G410800 , TraesCS6B02G410800 , TraesCS4B02G149200 , TraesCS3B02G385300 , TraesCS6A02G373000
Populus PNT27654 , PNT27655 , PNT27652 , PNT27653


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cDNA sequences
Sobic.010G054600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G331600 MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed K02209: MCM5, DNA replication licensing factor MCM5
2 Sobic.001G142000 deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed K01520: dut, dUTP pyrophosphatase
3 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
4 Sobic.004G119700 WD repeat-containing protein, putative, expressed K03363: cell division cycle 20, cofactor of APC complex
5 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
6 Sobic.003G201000 WD domain, G-beta repeat domain containing protein, expressed -
7 Sobic.003G361200 CDC6 - Putative DNA replication initiation protein, expressed K02213: cell division control protein 6
8 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
9 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
10 Sobic.003G369200 POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed K02320: DNA polymerase alpha subunit A
11 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
12 Sobic.001G013400 nuf2 family protein, expressed -
13 Sobic.006G116500 expressed protein -
14 Sobic.006G029300 expressed protein K15505: DNA repair protein RAD5
15 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
16 Sobic.001G070300 expressed protein -
17 Sobic.003G444300 expressed protein K11550: SPBC25, kinetochore protein Spc25, animal type
18 Sobic.004G270800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WD repeat-containing protein, putative, expressed K03363: cell division cycle 20, cofactor of APC complex
19 Sobic.001G083300 transducin family protein, putative, expressed K02180: cell cycle arrest protein BUB3
20 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein


Gene co-expression network
sample Sobic010G054600 Sobic010G054600 Sobic004G331600 Sobic004G331600 Sobic010G054600--Sobic004G331600 Sobic001G142000 Sobic001G142000 Sobic010G054600--Sobic001G142000 Sobic008G129200 Sobic008G129200 Sobic010G054600--Sobic008G129200 Sobic004G119700 Sobic004G119700 Sobic010G054600--Sobic004G119700 Sobic001G456500 Sobic001G456500 Sobic010G054600--Sobic001G456500 Sobic003G201000 Sobic003G201000 Sobic010G054600--Sobic003G201000 Sobic003G361200 Sobic003G361200 Sobic010G054600--Sobic003G361200 Sobic010G147700 Sobic010G147700 Sobic010G054600--Sobic010G147700 Sobic009G087000 Sobic009G087000 Sobic010G054600--Sobic009G087000 Sobic004G331600--Sobic001G456500 Sobic004G331600--Sobic008G129200 Sobic004G331600--Sobic010G054600 Sobic004G331600--Sobic009G087000 Sobic004G331600--Sobic001G142000 Sobic002G223900 Sobic002G223900 Sobic004G331600--Sobic002G223900 Sobic003G183700 Sobic003G183700 Sobic004G331600--Sobic003G183700 Sobic004G331600--Sobic010G147700 Sobic007G007800 Sobic007G007800 Sobic004G331600--Sobic007G007800 Sobic001G142000--Sobic001G456500 Sobic001G142000--Sobic010G054600 Sobic001G142000--Sobic004G331600 Sobic003G444300 Sobic003G444300 Sobic001G142000--Sobic003G444300 Sobic001G142000--Sobic008G129200 Sobic001G083300 Sobic001G083300 Sobic001G142000--Sobic001G083300 Sobic006G116500 Sobic006G116500 Sobic001G142000--Sobic006G116500 Sobic001G013400 Sobic001G013400 Sobic001G142000--Sobic001G013400 Sobic004G075900 Sobic004G075900 Sobic001G142000--Sobic004G075900 Sobic008G129200--Sobic004G331600 Sobic008G129200--Sobic009G087000 Sobic005G110535 Sobic005G110535 Sobic008G129200--Sobic005G110535 Sobic008G129200--Sobic001G456500 Sobic008G129200--Sobic010G147700 Sobic008G129200--Sobic003G183700 Sobic008G129200--Sobic001G083300 Sobic008G129200--Sobic010G054600 Sobic008G129200--Sobic006G116500 Sobic004G270800 Sobic004G270800 Sobic004G119700--Sobic004G270800 Sobic004G119700--Sobic010G054600 Sobic004G119700--Sobic001G142000 Sobic003G369200 Sobic003G369200 Sobic004G119700--Sobic003G369200 Sobic004G119700--Sobic008G129200 Sobic004G119700--Sobic010G147700 Sobic004G119700--Sobic004G331600 Sobic004G119700--Sobic005G110535 Sobic004G119700--Sobic009G087000 Sobic001G456500--Sobic006G116500 Sobic001G456500--Sobic004G331600 Sobic001G456500--Sobic001G142000 Sobic001G456500--Sobic001G083300 Sobic001G456500--Sobic008G129200 Sobic001G456500--Sobic002G223900 Sobic001G169800 Sobic001G169800 Sobic001G456500--Sobic001G169800 Sobic001G456500--Sobic003G444300 Sobic004G355500 Sobic004G355500 Sobic001G456500--Sobic004G355500 Sobic003G201000--Sobic010G147700 Sobic003G201000--Sobic003G369200 Sobic003G201000--Sobic009G087000 Sobic003G201000--Sobic003G444300 Sobic005G144600 Sobic005G144600 Sobic003G201000--Sobic005G144600 Sobic003G201000--Sobic010G054600 Sobic006G029300 Sobic006G029300 Sobic003G201000--Sobic006G029300 Sobic002G290000 Sobic002G290000 Sobic003G201000--Sobic002G290000 Sobic003G201000--Sobic005G110535 Sobic003G361200--Sobic008G129200 Sobic003G361200--Sobic001G456500 Sobic003G361200--Sobic004G331600 Sobic003G361200--Sobic009G087000 Sobic002G272300 Sobic002G272300 Sobic003G361200--Sobic002G272300 Sobic003G361200--Sobic010G054600 Sobic003G361200--Sobic001G142000 Sobic003G361200--Sobic010G147700 Sobic006G235600 Sobic006G235600 Sobic003G361200--Sobic006G235600 Sobic010G147700--Sobic006G029300 Sobic010G147700--Sobic009G087000 Sobic010G147700--Sobic005G110535 Sobic010G147700--Sobic003G369200 Sobic007G168900 Sobic007G168900 Sobic010G147700--Sobic007G168900 Sobic010G147700--Sobic008G129200 Sobic010G147700--Sobic005G144600 Sobic010G147700--Sobic003G183700 Sobic010G147700--Sobic003G201000 Sobic009G087000--Sobic010G147700 Sobic009G087000--Sobic003G183700 Sobic009G087000--Sobic005G110535 Sobic009G087000--Sobic008G129200 Sobic009G087000--Sobic006G029300 Sobic009G087000--Sobic003G369200 Sobic004G321400 Sobic004G321400 Sobic009G087000--Sobic004G321400 Sobic009G087000--Sobic004G331600 Sobic003G179500 Sobic003G179500 Sobic009G087000--Sobic003G179500
Octagon: transcription factors


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