Gene annotation
Transcriptome id Sobic.003G361200.1
Synonym Sb03g040310
Functional annotation CDC6 - Putative DNA replication initiation protein, expressed
UniProt C5XQG1
Pfam PF13401 PF09079
Panther DB PTHR10763
NCBI CDD KOG2227; Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase
KEGG Orthology K02213; cell division control protein 6
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G07270 : Cell division control, Cdc6
RAP-DB (Rice) LOC_Os01g63710.1 : CDC6 - Putative DNA replication initiation protein, expressed
MaizeGDB (Corn) Zm00025a026809 , Zm00025a039606
Brachypodium PNT73219
Barley HORVU3Hr1G084800.9 , HORVU3Hr1G084800.8 , HORVU3Hr1G084800.5 , HORVU3Hr1G084800.4 , HORVU3Hr1G084800.1 , HORVU3Hr1G084800.3 , HORVU3Hr1G084800.2 , HORVU3Hr1G084800.11 , HORVU3Hr1G084800.10 , HORVU3Hr1G084800.24 , HORVU3Hr1G084800.25 , HORVU3Hr1G084800.26 , HORVU3Hr1G084800.20 , HORVU3Hr1G084800.22 , HORVU3Hr1G084800.23 , HORVU3Hr1G084800.19 , HORVU3Hr1G084800.18 , HORVU3Hr1G084800.15 , HORVU3Hr1G084800.14 , HORVU3Hr1G084800.17
Wheat TraesCS3B02G400900 , TraesCS3A02G369000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
2 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
3 Sobic.004G331600 MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed K02209: MCM5, DNA replication licensing factor MCM5
4 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
5 Sobic.002G272300 expressed protein -
6 Sobic.010G054600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribonucleoside-diphosphate reductase large subunit, putative, expressed K10807: ribonucleoside-diphosphate reductase subunit M1
7 Sobic.001G142000 deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed K01520: dut, dUTP pyrophosphatase
8 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
9 Sobic.006G235600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@beta-D-xylosidase, putative, expressed K15920: xylan 1,4-beta-xylosidase
10 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
11 Sobic.006G116500 expressed protein -
12 Sobic.010G003100 monocopper oxidase, putative, expressed -
13 Sobic.004G020600 ATXR, putative, expressed -
14 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
15 Sobic.001G083300 transducin family protein, putative, expressed K02180: cell cycle arrest protein BUB3
16 Sobic.004G355500 RPA2A - Putative single-stranded DNA binding complex subunit 2, expressed K10739: RFA2, replication factor A2
17 Sobic.003G201000 WD domain, G-beta repeat domain containing protein, expressed -
18 Sobic.002G223900 OsFBX330 - F-box domain containing protein, expressed -
19 Sobic.004G243900 E2F family transcription factor protein, putative, expressed -
20 Sobic.003G369200 POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed K02320: DNA polymerase alpha subunit A


Gene co-expression network
sample Sobic003G361200 Sobic003G361200 Sobic008G129200 Sobic008G129200 Sobic003G361200--Sobic008G129200 Sobic001G456500 Sobic001G456500 Sobic003G361200--Sobic001G456500 Sobic004G331600 Sobic004G331600 Sobic003G361200--Sobic004G331600 Sobic009G087000 Sobic009G087000 Sobic003G361200--Sobic009G087000 Sobic002G272300 Sobic002G272300 Sobic003G361200--Sobic002G272300 Sobic010G054600 Sobic010G054600 Sobic003G361200--Sobic010G054600 Sobic001G142000 Sobic001G142000 Sobic003G361200--Sobic001G142000 Sobic010G147700 Sobic010G147700 Sobic003G361200--Sobic010G147700 Sobic006G235600 Sobic006G235600 Sobic003G361200--Sobic006G235600 Sobic008G129200--Sobic004G331600 Sobic008G129200--Sobic009G087000 Sobic005G110535 Sobic005G110535 Sobic008G129200--Sobic005G110535 Sobic008G129200--Sobic001G456500 Sobic008G129200--Sobic010G147700 Sobic003G183700 Sobic003G183700 Sobic008G129200--Sobic003G183700 Sobic001G083300 Sobic001G083300 Sobic008G129200--Sobic001G083300 Sobic008G129200--Sobic010G054600 Sobic006G116500 Sobic006G116500 Sobic008G129200--Sobic006G116500 Sobic001G456500--Sobic006G116500 Sobic001G456500--Sobic004G331600 Sobic001G456500--Sobic001G142000 Sobic001G456500--Sobic001G083300 Sobic001G456500--Sobic008G129200 Sobic002G223900 Sobic002G223900 Sobic001G456500--Sobic002G223900 Sobic001G169800 Sobic001G169800 Sobic001G456500--Sobic001G169800 Sobic003G444300 Sobic003G444300 Sobic001G456500--Sobic003G444300 Sobic004G355500 Sobic004G355500 Sobic001G456500--Sobic004G355500 Sobic004G331600--Sobic001G456500 Sobic004G331600--Sobic008G129200 Sobic004G331600--Sobic010G054600 Sobic004G331600--Sobic009G087000 Sobic004G331600--Sobic001G142000 Sobic004G331600--Sobic002G223900 Sobic004G331600--Sobic003G183700 Sobic004G331600--Sobic010G147700 Sobic007G007800 Sobic007G007800 Sobic004G331600--Sobic007G007800 Sobic009G087000--Sobic010G147700 Sobic009G087000--Sobic003G183700 Sobic009G087000--Sobic005G110535 Sobic009G087000--Sobic008G129200 Sobic006G029300 Sobic006G029300 Sobic009G087000--Sobic006G029300 Sobic003G369200 Sobic003G369200 Sobic009G087000--Sobic003G369200 Sobic004G321400 Sobic004G321400 Sobic009G087000--Sobic004G321400 Sobic009G087000--Sobic004G331600 Sobic003G179500 Sobic003G179500 Sobic009G087000--Sobic003G179500 Sobic002G272300--Sobic007G007800 Sobic009G184200 Sobic009G184200 Sobic002G272300--Sobic009G184200 Sobic002G272300--Sobic010G147700 Sobic003G032200 Sobic003G032200 Sobic002G272300--Sobic003G032200 Sobic002G272300--Sobic009G087000 Sobic002G272300--Sobic001G083300 Sobic002G272300--Sobic004G331600 Sobic002G272300--Sobic008G129200 Sobic002G272300--Sobic001G456500 Sobic010G054600--Sobic004G331600 Sobic010G054600--Sobic001G142000 Sobic010G054600--Sobic008G129200 Sobic004G119700 Sobic004G119700 Sobic010G054600--Sobic004G119700 Sobic010G054600--Sobic001G456500 Sobic003G201000 Sobic003G201000 Sobic010G054600--Sobic003G201000 Sobic010G054600--Sobic003G361200 Sobic010G054600--Sobic010G147700 Sobic010G054600--Sobic009G087000 Sobic001G142000--Sobic001G456500 Sobic001G142000--Sobic010G054600 Sobic001G142000--Sobic004G331600 Sobic001G142000--Sobic003G444300 Sobic001G142000--Sobic008G129200 Sobic001G142000--Sobic001G083300 Sobic001G142000--Sobic006G116500 Sobic001G013400 Sobic001G013400 Sobic001G142000--Sobic001G013400 Sobic004G075900 Sobic004G075900 Sobic001G142000--Sobic004G075900 Sobic010G147700--Sobic006G029300 Sobic010G147700--Sobic009G087000 Sobic010G147700--Sobic005G110535 Sobic010G147700--Sobic003G369200 Sobic007G168900 Sobic007G168900 Sobic010G147700--Sobic007G168900 Sobic010G147700--Sobic008G129200 Sobic005G144600 Sobic005G144600 Sobic010G147700--Sobic005G144600 Sobic010G147700--Sobic003G183700 Sobic010G147700--Sobic003G201000 Sobic006G235600--Sobic003G361200 Sobic003G289800 Sobic003G289800 Sobic006G235600--Sobic003G289800 Sobic006G235600--Sobic001G456500 Sobic006G235600--Sobic002G272300 Sobic006G235600--Sobic004G331600 Sobic006G235600--Sobic009G087000 Sobic006G235600--Sobic008G129200 Sobic004G238801 Sobic004G238801 Sobic006G235600--Sobic004G238801 Sobic010G156100 Sobic010G156100 Sobic006G235600--Sobic010G156100
Octagon: transcription factors


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