Gene annotation
Transcriptome id Sobic.006G235600.1
Synonym XYL4, Sb06g030270, ATBXL4
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
beta-D-xylosidase, putative, expressed
UniProt C5Y8Y2
Pfam PF14310 PF00933 PF01915
Panther DB PTHR30620 PTHR30620:SF40
NCBI CDD -
KEGG Orthology K15920; xylan 1,4-beta-xylosidase
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT5G64570 : beta-D-xylosidase 4
RAP-DB (Rice) LOC_Os04g54810.1 : beta-D-xylosidase, putative, expressed
MaizeGDB (Corn) Zm00025a057161 , Zm00025a029154 , Zm00025a051569
Brachypodium KQJ84878 , PNT72735 , KQK09520
Barley HORVU2Hr1G115640.7 , HORVU2Hr1G115640.6 , HORVU2Hr1G115640.5 , HORVU2Hr1G115640.4 , HORVU2Hr1G115640.3 , HORVU2Hr1G115640.2 , HORVU2Hr1G115640.9 , HORVU2Hr1G115640.8 , HORVU2Hr1G115640.19 , HORVU2Hr1G115640.18 , HORVU2Hr1G115640.17 , HORVU2Hr1G115640.16 , HORVU2Hr1G115640.15 , HORVU2Hr1G115640.14 , HORVU2Hr1G115640.13 , HORVU2Hr1G115640.12 , HORVU2Hr1G115640.11 , HORVU2Hr1G115640.10
Wheat TraesCS4B02G127100 , TraesCS4D02G143900 , TraesCS2A02G523300 , TraesCS2A02G523300 , TraesCS2B02G553100 , TraesCS2D02G525300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G235600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G361200 CDC6 - Putative DNA replication initiation protein, expressed K02213: cell division control protein 6
2 Sobic.003G289800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
3 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
4 Sobic.002G272300 expressed protein -
5 Sobic.004G331600 MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed K02209: MCM5, DNA replication licensing factor MCM5
6 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
7 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
8 Sobic.004G238801 - -
9 Sobic.010G156100 GDSL-like lipase/acylhydrolase, putative, expressed -
10 Sobic.005G143100 expressed protein -
11 Sobic.002G383100 expressed protein -
12 Sobic.007G007800 DNA repair metallo-beta-lactamase, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
13 Sobic.002G362700 zinc finger family protein, putative, expressed -
14 Sobic.010G003100 monocopper oxidase, putative, expressed -
15 Sobic.006G116500 expressed protein -
16 Sobic.003G373900 universal stress protein domain containing protein, putative, expressed -
17 Sobic.007G094900 glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
18 Sobic.001G083300 transducin family protein, putative, expressed K02180: cell cycle arrest protein BUB3
19 Sobic.001G142000 deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed K01520: dut, dUTP pyrophosphatase
20 Sobic.001G540900 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta


Gene co-expression network
sample Sobic006G235600 Sobic006G235600 Sobic003G361200 Sobic003G361200 Sobic006G235600--Sobic003G361200 Sobic003G289800 Sobic003G289800 Sobic006G235600--Sobic003G289800 Sobic001G456500 Sobic001G456500 Sobic006G235600--Sobic001G456500 Sobic002G272300 Sobic002G272300 Sobic006G235600--Sobic002G272300 Sobic004G331600 Sobic004G331600 Sobic006G235600--Sobic004G331600 Sobic009G087000 Sobic009G087000 Sobic006G235600--Sobic009G087000 Sobic008G129200 Sobic008G129200 Sobic006G235600--Sobic008G129200 Sobic004G238801 Sobic004G238801 Sobic006G235600--Sobic004G238801 Sobic010G156100 Sobic010G156100 Sobic006G235600--Sobic010G156100 Sobic003G361200--Sobic008G129200 Sobic003G361200--Sobic001G456500 Sobic003G361200--Sobic004G331600 Sobic003G361200--Sobic009G087000 Sobic003G361200--Sobic002G272300 Sobic010G054600 Sobic010G054600 Sobic003G361200--Sobic010G054600 Sobic001G142000 Sobic001G142000 Sobic003G361200--Sobic001G142000 Sobic010G147700 Sobic010G147700 Sobic003G361200--Sobic010G147700 Sobic003G361200--Sobic006G235600 Sobic002G383100 Sobic002G383100 Sobic003G289800--Sobic002G383100 Sobic003G289800--Sobic009G087000 Sobic001G051300 Sobic001G051300 Sobic003G289800--Sobic001G051300 Sobic003G183700 Sobic003G183700 Sobic003G289800--Sobic003G183700 Sobic003G420300 Sobic003G420300 Sobic003G289800--Sobic003G420300 Sobic003G179500 Sobic003G179500 Sobic003G289800--Sobic003G179500 Sobic005G110535 Sobic005G110535 Sobic003G289800--Sobic005G110535 Sobic003G389100 Sobic003G389100 Sobic003G289800--Sobic003G389100 Sobic003G289800--Sobic010G147700 Sobic006G116500 Sobic006G116500 Sobic001G456500--Sobic006G116500 Sobic001G456500--Sobic004G331600 Sobic001G456500--Sobic001G142000 Sobic001G083300 Sobic001G083300 Sobic001G456500--Sobic001G083300 Sobic001G456500--Sobic008G129200 Sobic002G223900 Sobic002G223900 Sobic001G456500--Sobic002G223900 Sobic001G169800 Sobic001G169800 Sobic001G456500--Sobic001G169800 Sobic003G444300 Sobic003G444300 Sobic001G456500--Sobic003G444300 Sobic004G355500 Sobic004G355500 Sobic001G456500--Sobic004G355500 Sobic007G007800 Sobic007G007800 Sobic002G272300--Sobic007G007800 Sobic009G184200 Sobic009G184200 Sobic002G272300--Sobic009G184200 Sobic002G272300--Sobic010G147700 Sobic003G032200 Sobic003G032200 Sobic002G272300--Sobic003G032200 Sobic002G272300--Sobic009G087000 Sobic002G272300--Sobic001G083300 Sobic002G272300--Sobic004G331600 Sobic002G272300--Sobic008G129200 Sobic002G272300--Sobic001G456500 Sobic004G331600--Sobic001G456500 Sobic004G331600--Sobic008G129200 Sobic004G331600--Sobic010G054600 Sobic004G331600--Sobic009G087000 Sobic004G331600--Sobic001G142000 Sobic004G331600--Sobic002G223900 Sobic004G331600--Sobic003G183700 Sobic004G331600--Sobic010G147700 Sobic004G331600--Sobic007G007800 Sobic009G087000--Sobic010G147700 Sobic009G087000--Sobic003G183700 Sobic009G087000--Sobic005G110535 Sobic009G087000--Sobic008G129200 Sobic006G029300 Sobic006G029300 Sobic009G087000--Sobic006G029300 Sobic003G369200 Sobic003G369200 Sobic009G087000--Sobic003G369200 Sobic004G321400 Sobic004G321400 Sobic009G087000--Sobic004G321400 Sobic009G087000--Sobic004G331600 Sobic009G087000--Sobic003G179500 Sobic008G129200--Sobic004G331600 Sobic008G129200--Sobic009G087000 Sobic008G129200--Sobic005G110535 Sobic008G129200--Sobic001G456500 Sobic008G129200--Sobic010G147700 Sobic008G129200--Sobic003G183700 Sobic008G129200--Sobic001G083300 Sobic008G129200--Sobic010G054600 Sobic008G129200--Sobic006G116500 Sobic007G121650 Sobic007G121650 Sobic004G238801--Sobic007G121650 Sobic010G178300 Sobic010G178300 Sobic004G238801--Sobic010G178300 Sobic005G157300 Sobic005G157300 Sobic004G238801--Sobic005G157300 Sobic010G204700 Sobic010G204700 Sobic004G238801--Sobic010G204700 Sobic004G238801--Sobic002G272300 Sobic001G148450 Sobic001G148450 Sobic004G238801--Sobic001G148450 Sobic001G377700 Sobic001G377700 Sobic004G238801--Sobic001G377700 Sobic003G320300 Sobic003G320300 Sobic004G238801--Sobic003G320300 Sobic001G439400 Sobic001G439400 Sobic004G238801--Sobic001G439400 Sobic003G308100 Sobic003G308100 Sobic010G156100--Sobic003G308100 Sobic006G111100 Sobic006G111100 Sobic010G156100--Sobic006G111100 Sobic001G495500 Sobic001G495500 Sobic010G156100--Sobic001G495500 Sobic003G142100 Sobic003G142100 Sobic010G156100--Sobic003G142100 Sobic003G283400 Sobic003G283400 Sobic010G156100--Sobic003G283400 Sobic003G365800 Sobic003G365800 Sobic010G156100--Sobic003G365800 Sobic004G072900 Sobic004G072900 Sobic010G156100--Sobic004G072900 Sobic006G123200 Sobic006G123200 Sobic010G156100--Sobic006G123200 Sobic009G151100 Sobic009G151100 Sobic010G156100--Sobic009G151100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.