Gene annotation
Transcriptome id Sobic.002G383100.1
Synonym
Functional annotation expressed protein
UniProt A0A1B6QFP2
Pfam PF08263 PF00560 PF00069
Panther DB PTHR27000 PTHR27000:SF179
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0006468protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT5G10020 : Leucine-rich receptor-like protein kinase family protein
RAP-DB (Rice) LOC_Os07g43350.1 : expressed protein
MaizeGDB (Corn) Zm00025a015254 , Zm00025a048820
Brachypodium KQK15115
Barley HORVU2Hr1G029120.2 , HORVU2Hr1G029120.3 , HORVU2Hr1G029120.1 , HORVU2Hr1G029120.6 , HORVU2Hr1G029120.7 , HORVU2Hr1G029120.4 , HORVU2Hr1G029120.5
Wheat TraesCS2B02G185800 , TraesCS2B02G185800 , TraesCS2B02G185800 , TraesCS2A02G159900 , TraesCS2A02G159900 , TraesCS2D02G167300 , TraesCS2D02G167300
Populus -


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cDNA sequences
Sobic.002G383100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G289800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
2 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
3 Sobic.001G051300 BEE 1, putative, expressed -
4 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
5 Sobic.003G017500 TTL1, putative, expressed -
6 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
7 Sobic.003G032200 IQ calmodulin-binding motif domain containing protein, expressed -
8 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
9 Sobic.004G315700 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
10 Sobic.003G410600 exostosin family domain containing protein, expressed -
11 Sobic.003G201000 WD domain, G-beta repeat domain containing protein, expressed -
12 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
13 Sobic.003G444100 "OsCCS52B(Ortholog in rice:Su’udi et al., 2012)"(PubMedID : 31659875)@WD repeat-containing protein, putative, expressed K03364: cell division cycle 20-like protein 1, cofactor of APC complex
14 Sobic.003G420300 zinc finger protein, putative, expressed -
15 Sobic.007G168900 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
16 Sobic.001G487200 zinc finger, C3HC4 type domain containing protein, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
17 Sobic.003G013000 inactive receptor kinase At2g26730 precursor, putative, expressed -
18 Sobic.009G172950 - K02541: DNA replication licensing factor MCM3
19 Sobic.003G369200 POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed K02320: DNA polymerase alpha subunit A
20 Sobic.002G362700 zinc finger family protein, putative, expressed -


Gene co-expression network
sample Sobic002G383100 Sobic002G383100 Sobic003G289800 Sobic003G289800 Sobic002G383100--Sobic003G289800 Sobic009G087000 Sobic009G087000 Sobic002G383100--Sobic009G087000 Sobic001G051300 Sobic001G051300 Sobic002G383100--Sobic001G051300 Sobic010G147700 Sobic010G147700 Sobic002G383100--Sobic010G147700 Sobic003G017500 Sobic003G017500 Sobic002G383100--Sobic003G017500 Sobic003G179500 Sobic003G179500 Sobic002G383100--Sobic003G179500 Sobic003G032200 Sobic003G032200 Sobic002G383100--Sobic003G032200 Sobic003G183700 Sobic003G183700 Sobic002G383100--Sobic003G183700 Sobic004G315700 Sobic004G315700 Sobic002G383100--Sobic004G315700 Sobic003G289800--Sobic002G383100 Sobic003G289800--Sobic009G087000 Sobic003G289800--Sobic001G051300 Sobic003G289800--Sobic003G183700 Sobic003G420300 Sobic003G420300 Sobic003G289800--Sobic003G420300 Sobic003G289800--Sobic003G179500 Sobic005G110535 Sobic005G110535 Sobic003G289800--Sobic005G110535 Sobic003G389100 Sobic003G389100 Sobic003G289800--Sobic003G389100 Sobic003G289800--Sobic010G147700 Sobic009G087000--Sobic010G147700 Sobic009G087000--Sobic003G183700 Sobic009G087000--Sobic005G110535 Sobic008G129200 Sobic008G129200 Sobic009G087000--Sobic008G129200 Sobic006G029300 Sobic006G029300 Sobic009G087000--Sobic006G029300 Sobic003G369200 Sobic003G369200 Sobic009G087000--Sobic003G369200 Sobic004G321400 Sobic004G321400 Sobic009G087000--Sobic004G321400 Sobic004G331600 Sobic004G331600 Sobic009G087000--Sobic004G331600 Sobic009G087000--Sobic003G179500 Sobic001G051300--Sobic003G289800 Sobic001G051300--Sobic002G383100 Sobic007G139500 Sobic007G139500 Sobic001G051300--Sobic007G139500 Sobic001G051300--Sobic009G087000 Sobic006G071628 Sobic006G071628 Sobic001G051300--Sobic006G071628 Sobic001G051300--Sobic003G179500 Sobic001G051300--Sobic010G147700 Sobic001G051300--Sobic003G017500 Sobic003G201000 Sobic003G201000 Sobic001G051300--Sobic003G201000 Sobic010G147700--Sobic006G029300 Sobic010G147700--Sobic009G087000 Sobic010G147700--Sobic005G110535 Sobic010G147700--Sobic003G369200 Sobic007G168900 Sobic007G168900 Sobic010G147700--Sobic007G168900 Sobic010G147700--Sobic008G129200 Sobic005G144600 Sobic005G144600 Sobic010G147700--Sobic005G144600 Sobic010G147700--Sobic003G183700 Sobic010G147700--Sobic003G201000 Sobic003G017500--Sobic002G383100 Sobic003G017500--Sobic001G051300 Sobic007G130900 Sobic007G130900 Sobic003G017500--Sobic007G130900 Sobic001G437500 Sobic001G437500 Sobic003G017500--Sobic001G437500 Sobic003G017500--Sobic007G139500 Sobic009G073400 Sobic009G073400 Sobic003G017500--Sobic009G073400 Sobic009G206500 Sobic009G206500 Sobic003G017500--Sobic009G206500 Sobic001G159800 Sobic001G159800 Sobic003G017500--Sobic001G159800 Sobic003G410600 Sobic003G410600 Sobic003G017500--Sobic003G410600 Sobic003G179500--Sobic003G183700 Sobic010G103700 Sobic010G103700 Sobic003G179500--Sobic010G103700 Sobic010G105400 Sobic010G105400 Sobic003G179500--Sobic010G105400 Sobic003G179500--Sobic005G144600 Sobic003G179500--Sobic010G147700 Sobic003G179500--Sobic009G087000 Sobic003G179500--Sobic005G110535 Sobic006G116500 Sobic006G116500 Sobic003G179500--Sobic006G116500 Sobic004G047100 Sobic004G047100 Sobic003G179500--Sobic004G047100 Sobic009G184200 Sobic009G184200 Sobic003G032200--Sobic009G184200 Sobic010G086000 Sobic010G086000 Sobic003G032200--Sobic010G086000 Sobic003G032200--Sobic010G105400 Sobic010G241100 Sobic010G241100 Sobic003G032200--Sobic010G241100 Sobic009G172950 Sobic009G172950 Sobic003G032200--Sobic009G172950 Sobic006G142500 Sobic006G142500 Sobic003G032200--Sobic006G142500 Sobic002G296000 Sobic002G296000 Sobic003G032200--Sobic002G296000 Sobic003G444100 Sobic003G444100 Sobic003G032200--Sobic003G444100 Sobic002G204400 Sobic002G204400 Sobic003G032200--Sobic002G204400 Sobic006G051000 Sobic006G051000 Sobic003G183700--Sobic006G051000 Sobic003G183700--Sobic009G087000 Sobic006G195500 Sobic006G195500 Sobic003G183700--Sobic006G195500 Sobic003G183700--Sobic010G103700 Sobic003G183700--Sobic003G179500 Sobic003G183700--Sobic005G110535 Sobic003G183700--Sobic008G129200 Sobic003G183700--Sobic004G321400 Sobic003G183700--Sobic010G147700 Sobic001G487200 Sobic001G487200 Sobic004G315700--Sobic001G487200 Sobic009G212100 Sobic009G212100 Sobic004G315700--Sobic009G212100 Sobic001G296800 Sobic001G296800 Sobic004G315700--Sobic001G296800 Sobic009G052100 Sobic009G052100 Sobic004G315700--Sobic009G052100 Sobic006G084300 Sobic006G084300 Sobic004G315700--Sobic006G084300 Sobic004G315700--Sobic003G420300 Sobic006G218900 Sobic006G218900 Sobic004G315700--Sobic006G218900 Sobic003G345000 Sobic003G345000 Sobic004G315700--Sobic003G345000 Sobic001G540700 Sobic001G540700 Sobic004G315700--Sobic001G540700
Octagon: transcription factors


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