Gene annotation
Transcriptome id Sobic.001G487200.1
Synonym Sb01g045580, BB, BB2
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1B6QQ85
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF75
NCBI CDD -
KEGG Orthology K19045; E3 ubiquitin-protein ligase BIG BROTHER and related proteins
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G63530 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os03g07790.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a000872 , Zm00025a053320
Brachypodium KQK23378 , KQK23377
Barley HORVU4Hr1G055690.9 , HORVU4Hr1G055690.8 , HORVU4Hr1G055690.5 , HORVU4Hr1G055690.6 , HORVU4Hr1G055690.18 , HORVU4Hr1G055690.15 , HORVU4Hr1G055690.14 , HORVU4Hr1G055690.16
Wheat TraesCS4D02G192500 , TraesCS4D02G192500 , TraesCS4A02G112900 , TraesCS4B02G191300
Populus -


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cDNA sequences
Sobic.001G487200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G315700 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
2 Sobic.009G212100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IQ calmodulin-binding motif family protein, putative, expressed -
3 Sobic.001G369800 monocopper oxidase, putative, expressed -
4 Sobic.001G231200 expressed protein -
5 Sobic.002G370400 expressed protein -
6 Sobic.003G226700 kinesin motor domain containing protein, putative, expressed K10393: KIF2_24, kinesin family member 2/24
7 Sobic.001G540700 expressed protein -
8 Sobic.001G296800 WD repeat-containing protein 8, putative, expressed -
9 Sobic.007G084200 expressed protein -
10 Sobic.002G284100 ATROPGEF7/ROPGEF7, putative, expressed -
11 Sobic.008G096200 AGC_PVPK_like_kin82y.19 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
12 Sobic.007G166800 domain of unknown function DUF966 domain containing protein, expressed -
13 Sobic.001G113800 receptor protein kinase TMK1 precursor, putative, expressed -
14 Sobic.003G420300 zinc finger protein, putative, expressed -
15 Sobic.001G051300 BEE 1, putative, expressed -
16 Sobic.006G218900 TKL_IRAK_CrRLK1L-1.9 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
17 Sobic.001G296100 DUF630/DUF632 domains containing protein, putative, expressed -
18 Sobic.002G383100 expressed protein -
19 Sobic.004G267600 OsFBT4 - F-box and tubby domain containing protein, expressed -
20 Sobic.001G212600 a_IG002N01.7, putative, expressed -


Gene co-expression network
sample Sobic001G487200 Sobic001G487200 Sobic004G315700 Sobic004G315700 Sobic001G487200--Sobic004G315700 Sobic009G212100 Sobic009G212100 Sobic001G487200--Sobic009G212100 Sobic001G369800 Sobic001G369800 Sobic001G487200--Sobic001G369800 Sobic001G231200 Sobic001G231200 Sobic001G487200--Sobic001G231200 Sobic002G370400 Sobic002G370400 Sobic001G487200--Sobic002G370400 Sobic003G226700 Sobic003G226700 Sobic001G487200--Sobic003G226700 Sobic001G540700 Sobic001G540700 Sobic001G487200--Sobic001G540700 Sobic001G296800 Sobic001G296800 Sobic001G487200--Sobic001G296800 Sobic007G084200 Sobic007G084200 Sobic001G487200--Sobic007G084200 Sobic004G315700--Sobic001G487200 Sobic004G315700--Sobic009G212100 Sobic004G315700--Sobic001G296800 Sobic009G052100 Sobic009G052100 Sobic004G315700--Sobic009G052100 Sobic006G084300 Sobic006G084300 Sobic004G315700--Sobic006G084300 Sobic003G420300 Sobic003G420300 Sobic004G315700--Sobic003G420300 Sobic006G218900 Sobic006G218900 Sobic004G315700--Sobic006G218900 Sobic003G345000 Sobic003G345000 Sobic004G315700--Sobic003G345000 Sobic004G315700--Sobic001G540700 Sobic009G212100--Sobic001G487200 Sobic009G212100--Sobic004G315700 Sobic009G212100--Sobic001G296800 Sobic009G212100--Sobic003G226700 Sobic009G212100--Sobic007G084200 Sobic006G267500 Sobic006G267500 Sobic009G212100--Sobic006G267500 Sobic009G212100--Sobic006G084300 Sobic009G212100--Sobic001G369800 Sobic006G254500 Sobic006G254500 Sobic009G212100--Sobic006G254500 Sobic002G284100 Sobic002G284100 Sobic001G369800--Sobic002G284100 Sobic001G369800--Sobic001G487200 Sobic001G123100 Sobic001G123100 Sobic001G369800--Sobic001G123100 Sobic001G369800--Sobic001G540700 Sobic001G369800--Sobic006G218900 Sobic001G369800--Sobic009G212100 Sobic003G283600 Sobic003G283600 Sobic001G369800--Sobic003G283600 Sobic003G351900 Sobic003G351900 Sobic001G369800--Sobic003G351900 Sobic001G212600 Sobic001G212600 Sobic001G369800--Sobic001G212600 Sobic008G096200 Sobic008G096200 Sobic001G231200--Sobic008G096200 Sobic001G231200--Sobic001G487200 Sobic001G231200--Sobic002G370400 Sobic010G211800 Sobic010G211800 Sobic001G231200--Sobic010G211800 Sobic010G105400 Sobic010G105400 Sobic001G231200--Sobic010G105400 Sobic010G129700 Sobic010G129700 Sobic001G231200--Sobic010G129700 Sobic003G013000 Sobic003G013000 Sobic001G231200--Sobic003G013000 Sobic003G444100 Sobic003G444100 Sobic001G231200--Sobic003G444100 Sobic002G394500 Sobic002G394500 Sobic001G231200--Sobic002G394500 Sobic002G370400--Sobic001G487200 Sobic002G370400--Sobic001G231200 Sobic002G370400--Sobic004G315700 Sobic006G272500 Sobic006G272500 Sobic002G370400--Sobic006G272500 Sobic002G370400--Sobic009G212100 Sobic002G370400--Sobic001G296800 Sobic009G124800 Sobic009G124800 Sobic002G370400--Sobic009G124800 Sobic003G153900 Sobic003G153900 Sobic002G370400--Sobic003G153900 Sobic002G370400--Sobic010G211800 Sobic003G226700--Sobic007G084200 Sobic003G226700--Sobic003G420300 Sobic003G292700 Sobic003G292700 Sobic003G226700--Sobic003G292700 Sobic001G425700 Sobic001G425700 Sobic003G226700--Sobic001G425700 Sobic003G289800 Sobic003G289800 Sobic003G226700--Sobic003G289800 Sobic003G226700--Sobic009G212100 Sobic003G226700--Sobic001G487200 Sobic003G226700--Sobic004G315700 Sobic003G024000 Sobic003G024000 Sobic003G226700--Sobic003G024000 Sobic001G540700--Sobic002G284100 Sobic007G197100 Sobic007G197100 Sobic001G540700--Sobic007G197100 Sobic004G207000 Sobic004G207000 Sobic001G540700--Sobic004G207000 Sobic004G267600 Sobic004G267600 Sobic001G540700--Sobic004G267600 Sobic001G540700--Sobic004G315700 Sobic006G272800 Sobic006G272800 Sobic001G540700--Sobic006G272800 Sobic001G540700--Sobic001G487200 Sobic001G540700--Sobic001G369800 Sobic001G540700--Sobic003G345000 Sobic001G296800--Sobic009G212100 Sobic001G296800--Sobic004G315700 Sobic010G103500 Sobic010G103500 Sobic001G296800--Sobic010G103500 Sobic001G296800--Sobic001G487200 Sobic004G129500 Sobic004G129500 Sobic001G296800--Sobic004G129500 Sobic001G361200 Sobic001G361200 Sobic001G296800--Sobic001G361200 Sobic001G296800--Sobic002G370400 Sobic001G296800--Sobic001G212600 Sobic001G296800--Sobic009G052100 Sobic007G084200--Sobic003G226700 Sobic007G084200--Sobic009G212100 Sobic007G084200--Sobic003G420300 Sobic007G084200--Sobic001G487200 Sobic007G084200--Sobic003G345000 Sobic007G084200--Sobic003G292700 Sobic007G084200--Sobic006G218900 Sobic007G084200--Sobic001G369800 Sobic007G084200--Sobic004G315700
Octagon: transcription factors


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