Gene annotation
Transcriptome id Sobic.002G284100.1
Synonym ROPGEF1, ATROPGEF1, Sb02g031660
Functional annotation ATROPGEF7/ROPGEF7, putative, expressed
UniProt C5X701
Pfam PF03759
Panther DB PTHR33101 PTHR33101:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005089; Rho guanyl-nucleotide exchange factor activity


Orthologs (automatic annotation)
TAIR AT4G38430 : rho guanyl-nucleotide exchange factor 1
RAP-DB (Rice) LOC_Os09g37270.1 : ATROPGEF7/ROPGEF7, putative, expressed
MaizeGDB (Corn) Zm00025a010245 , Zm00025a003277 , Zm00025a047994 , Zm00025a014490
Brachypodium PNT71128 , PNT71127 , KQK05954 , KQJ91296
Barley HORVU5Hr1G085510.1 , HORVU1Hr1G053350.9 , HORVU1Hr1G053350.8 , HORVU1Hr1G053350.7 , HORVU1Hr1G053350.6 , HORVU1Hr1G053350.5 , HORVU1Hr1G053350.4 , HORVU1Hr1G072910.10 , HORVU1Hr1G072910.11 , HORVU1Hr1G072910.14 , HORVU1Hr1G072910.1 , HORVU1Hr1G072910.2 , HORVU1Hr1G072910.3 , HORVU1Hr1G072910.6 , HORVU1Hr1G072910.7 , HORVU1Hr1G072910.8 , HORVU1Hr1G072910.9
Wheat TraesCS6D02G388300 , TraesCS1B02G222700 , TraesCS1D02G211900 , TraesCS2A02G408100 , TraesCS5A02G340900 , TraesCS1D02G280000 , TraesCS1A02G208700 , TraesCS5D02G346100 , TraesCS2D02G405400 , TraesCS5B02G339200 , TraesCS1A02G280900 , TraesCS1A02G280900 , TraesCS6B02G449200 , TraesCS1B02G289900 , TraesCS3B02G396500 , TraesCS3D02G357800 , TraesCS3D02G357800 , TraesCS3D02G357800 , TraesCS3D02G357800
Populus -


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cDNA sequences
Sobic.002G284100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G272800 Most C2 domain protein(PubMedID : 29491869)@anthranilate phosphoribosyltransferase, putative, expressed -
2 Sobic.004G267600 OsFBT4 - F-box and tubby domain containing protein, expressed -
3 Sobic.002G027600 receptor protein kinase CLAVATA1 precursor, putative, expressed -
4 Sobic.001G369800 monocopper oxidase, putative, expressed -
5 Sobic.001G123100 Os3bglu8 - beta-glucosidase, exo-beta-glucansase, high similarity to Os3bglu7, expressed K05350: beta-glucosidase
6 Sobic.001G540700 expressed protein -
7 Sobic.010G086000 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
8 Sobic.009G172950 - K02541: DNA replication licensing factor MCM3
9 Sobic.006G142500 protein kinase, putative, expressed -
10 Sobic.005G143100 expressed protein -
11 Sobic.002G006100 phytosulfokine receptor precursor, putative, expressed -
12 Sobic.001G452900 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
13 Sobic.001G158300 SNF7 domain containing protein, putative, expressed K12191: charged multivesicular body protein 2A
14 Sobic.005G032600 glucan endo-1,3-beta-glucosidase-related, putative, expressed -
15 Sobic.001G493900 beta-galactosidase, putative, expressed -
16 Sobic.001G487200 zinc finger, C3HC4 type domain containing protein, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
17 Sobic.010G003300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IQ calmodulin-binding motif family protein, putative, expressed -
18 Sobic.006G160200 MSP domain containing protein, expressed -
19 Sobic.002G253900 growth regulator related protein, putative, expressed -
20 Sobic.008G070700 leafbladeless1, putative, expressed -


Gene co-expression network
sample Sobic002G284100 Sobic002G284100 Sobic006G272800 Sobic006G272800 Sobic002G284100--Sobic006G272800 Sobic004G267600 Sobic004G267600 Sobic002G284100--Sobic004G267600 Sobic002G027600 Sobic002G027600 Sobic002G284100--Sobic002G027600 Sobic001G369800 Sobic001G369800 Sobic002G284100--Sobic001G369800 Sobic001G123100 Sobic001G123100 Sobic002G284100--Sobic001G123100 Sobic001G540700 Sobic001G540700 Sobic002G284100--Sobic001G540700 Sobic010G086000 Sobic010G086000 Sobic002G284100--Sobic010G086000 Sobic009G172950 Sobic009G172950 Sobic002G284100--Sobic009G172950 Sobic006G142500 Sobic006G142500 Sobic002G284100--Sobic006G142500 Sobic006G272800--Sobic002G284100 Sobic006G272800--Sobic002G027600 Sobic006G272800--Sobic004G267600 Sobic008G070700 Sobic008G070700 Sobic006G272800--Sobic008G070700 Sobic005G032600 Sobic005G032600 Sobic006G272800--Sobic005G032600 Sobic001G468000 Sobic001G468000 Sobic006G272800--Sobic001G468000 Sobic002G006100 Sobic002G006100 Sobic006G272800--Sobic002G006100 Sobic006G272800--Sobic006G142500 Sobic001G158300 Sobic001G158300 Sobic006G272800--Sobic001G158300 Sobic001G493900 Sobic001G493900 Sobic004G267600--Sobic001G493900 Sobic004G267600--Sobic002G284100 Sobic010G129700 Sobic010G129700 Sobic004G267600--Sobic010G129700 Sobic004G267600--Sobic006G142500 Sobic004G267600--Sobic002G027600 Sobic004G267600--Sobic006G272800 Sobic002G417000 Sobic002G417000 Sobic004G267600--Sobic002G417000 Sobic004G267600--Sobic005G032600 Sobic005G062600 Sobic005G062600 Sobic004G267600--Sobic005G062600 Sobic002G027600--Sobic002G006100 Sobic002G027600--Sobic006G272800 Sobic002G027600--Sobic004G267600 Sobic002G027600--Sobic005G032600 Sobic002G027600--Sobic002G284100 Sobic002G027600--Sobic006G142500 Sobic009G127800 Sobic009G127800 Sobic002G027600--Sobic009G127800 Sobic003G351900 Sobic003G351900 Sobic002G027600--Sobic003G351900 Sobic001G079900 Sobic001G079900 Sobic002G027600--Sobic001G079900 Sobic001G369800--Sobic002G284100 Sobic001G487200 Sobic001G487200 Sobic001G369800--Sobic001G487200 Sobic001G369800--Sobic001G123100 Sobic001G369800--Sobic001G540700 Sobic006G218900 Sobic006G218900 Sobic001G369800--Sobic006G218900 Sobic009G212100 Sobic009G212100 Sobic001G369800--Sobic009G212100 Sobic003G283600 Sobic003G283600 Sobic001G369800--Sobic003G283600 Sobic001G369800--Sobic003G351900 Sobic001G212600 Sobic001G212600 Sobic001G369800--Sobic001G212600 Sobic001G123100--Sobic002G284100 Sobic002G253900 Sobic002G253900 Sobic001G123100--Sobic002G253900 Sobic001G123100--Sobic001G369800 Sobic005G143100 Sobic005G143100 Sobic001G123100--Sobic005G143100 Sobic004G145300 Sobic004G145300 Sobic001G123100--Sobic004G145300 Sobic001G123300 Sobic001G123300 Sobic001G123100--Sobic001G123300 Sobic001G123100--Sobic001G540700 Sobic001G123100--Sobic002G006100 Sobic003G224700 Sobic003G224700 Sobic001G123100--Sobic003G224700 Sobic001G540700--Sobic002G284100 Sobic007G197100 Sobic007G197100 Sobic001G540700--Sobic007G197100 Sobic004G207000 Sobic004G207000 Sobic001G540700--Sobic004G207000 Sobic001G540700--Sobic004G267600 Sobic004G315700 Sobic004G315700 Sobic001G540700--Sobic004G315700 Sobic001G540700--Sobic006G272800 Sobic001G540700--Sobic001G487200 Sobic001G540700--Sobic001G369800 Sobic003G345000 Sobic003G345000 Sobic001G540700--Sobic003G345000 Sobic010G086000--Sobic006G142500 Sobic003G032200 Sobic003G032200 Sobic010G086000--Sobic003G032200 Sobic010G241100 Sobic010G241100 Sobic010G086000--Sobic010G241100 Sobic001G452900 Sobic001G452900 Sobic010G086000--Sobic001G452900 Sobic010G192500 Sobic010G192500 Sobic010G086000--Sobic010G192500 Sobic004G234500 Sobic004G234500 Sobic010G086000--Sobic004G234500 Sobic010G086000--Sobic004G267600 Sobic010G086000--Sobic002G284100 Sobic001G054700 Sobic001G054700 Sobic010G086000--Sobic001G054700 Sobic003G183700 Sobic003G183700 Sobic009G172950--Sobic003G183700 Sobic009G087000 Sobic009G087000 Sobic009G172950--Sobic009G087000 Sobic009G172950--Sobic003G032200 Sobic003G444300 Sobic003G444300 Sobic009G172950--Sobic003G444300 Sobic001G083300 Sobic001G083300 Sobic009G172950--Sobic001G083300 Sobic009G184200 Sobic009G184200 Sobic009G172950--Sobic009G184200 Sobic004G321400 Sobic004G321400 Sobic009G172950--Sobic004G321400 Sobic001G105800 Sobic001G105800 Sobic009G172950--Sobic001G105800 Sobic001G146900 Sobic001G146900 Sobic009G172950--Sobic001G146900 Sobic006G142500--Sobic010G086000 Sobic006G142500--Sobic004G267600 Sobic006G142500--Sobic010G192500 Sobic009G225500 Sobic009G225500 Sobic006G142500--Sobic009G225500 Sobic006G142500--Sobic003G032200 Sobic006G142500--Sobic004G234500 Sobic006G142500--Sobic009G127800 Sobic009G047000 Sobic009G047000 Sobic006G142500--Sobic009G047000 Sobic001G390400 Sobic001G390400 Sobic006G142500--Sobic001G390400
Octagon: transcription factors


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