Gene annotation
Transcriptome id Sobic.006G160200.2,Sobic.006G160200.1
Synonym PVA12, Sb06g023710
Functional annotation MSP domain containing protein, expressed
UniProt C5YCX3 , C5YCX9
Pfam PF00635
Panther DB PTHR10809 PTHR10809:SF49
NCBI CDD KOG0439; VAMP-associated protein involved in inositol metabolism
KEGG Orthology -
Gene Ontology GO:0005789; endoplasmic reticulum membrane


Orthologs (automatic annotation)
TAIR AT2G45140 : plant VAP homolog 12
RAP-DB (Rice) LOC_Os08g06020.1 : MSP domain containing protein, expressed
MaizeGDB (Corn) Zm00025a056591
Brachypodium KQJ83784 , KQJ83785 , KQJ83783
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G183600 IQ calmodulin-binding motif family protein, putative, expressed -
2 Sobic.002G284100 ATROPGEF7/ROPGEF7, putative, expressed -
3 Sobic.004G267600 OsFBT4 - F-box and tubby domain containing protein, expressed -
4 Sobic.005G062600 MLO domain containing protein, putative, expressed K08472: mlo protein
5 Sobic.001G487200 zinc finger, C3HC4 type domain containing protein, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
6 Sobic.009G172950 - K02541: DNA replication licensing factor MCM3
7 Sobic.001G369800 monocopper oxidase, putative, expressed -
8 Sobic.001G540700 expressed protein -
9 Sobic.006G272800 Most C2 domain protein(PubMedID : 29491869)@anthranilate phosphoribosyltransferase, putative, expressed -
10 Sobic.001G493900 beta-galactosidase, putative, expressed -
11 Sobic.010G092400 glycosyl transferase 8 domain containing protein, putative, expressed -
12 Sobic.001G116600 inactive receptor kinase At2g26730 precursor, putative, expressed -
13 Sobic.004G246500 ATMAP70 protein, putative, expressed -
14 Sobic.007G008300 WD domain, G-beta repeat domain containing protein, expressed K10751: chromatin assembly factor 1 subunit B
15 Sobic.002G302600 OsFBX291 - F-box domain containing protein, expressed -
16 Sobic.001G074000 receptor protein kinase CLAVATA1 precursor, putative, expressed -
17 Sobic.001G105800 OsFBX109 - F-box domain containing protein, expressed -
18 Sobic.004G207000 fasciated ear2, putative, expressed -
19 Sobic.008G070700 leafbladeless1, putative, expressed -
20 Sobic.010G029000 expressed protein -


Gene co-expression network
sample Sobic006G160200 Sobic006G160200 Sobic006G183600 Sobic006G183600 Sobic006G160200--Sobic006G183600 Sobic002G284100 Sobic002G284100 Sobic006G160200--Sobic002G284100 Sobic004G267600 Sobic004G267600 Sobic006G160200--Sobic004G267600 Sobic005G062600 Sobic005G062600 Sobic006G160200--Sobic005G062600 Sobic001G487200 Sobic001G487200 Sobic006G160200--Sobic001G487200 Sobic009G172950 Sobic009G172950 Sobic006G160200--Sobic009G172950 Sobic001G369800 Sobic001G369800 Sobic006G160200--Sobic001G369800 Sobic001G540700 Sobic001G540700 Sobic006G160200--Sobic001G540700 Sobic006G272800 Sobic006G272800 Sobic006G160200--Sobic006G272800 Sobic006G183600--Sobic006G160200 Sobic002G302600 Sobic002G302600 Sobic006G183600--Sobic002G302600 Sobic003G240100 Sobic003G240100 Sobic006G183600--Sobic003G240100 Sobic001G300400 Sobic001G300400 Sobic006G183600--Sobic001G300400 Sobic002G353200 Sobic002G353200 Sobic006G183600--Sobic002G353200 Sobic006G183600--Sobic002G284100 Sobic006G183600--Sobic001G487200 Sobic006G183600--Sobic001G540700 Sobic006G267800 Sobic006G267800 Sobic006G183600--Sobic006G267800 Sobic002G284100--Sobic006G272800 Sobic002G284100--Sobic004G267600 Sobic002G027600 Sobic002G027600 Sobic002G284100--Sobic002G027600 Sobic002G284100--Sobic001G369800 Sobic001G123100 Sobic001G123100 Sobic002G284100--Sobic001G123100 Sobic002G284100--Sobic001G540700 Sobic010G086000 Sobic010G086000 Sobic002G284100--Sobic010G086000 Sobic002G284100--Sobic009G172950 Sobic006G142500 Sobic006G142500 Sobic002G284100--Sobic006G142500 Sobic001G493900 Sobic001G493900 Sobic004G267600--Sobic001G493900 Sobic004G267600--Sobic002G284100 Sobic010G129700 Sobic010G129700 Sobic004G267600--Sobic010G129700 Sobic004G267600--Sobic006G142500 Sobic004G267600--Sobic002G027600 Sobic004G267600--Sobic006G272800 Sobic002G417000 Sobic002G417000 Sobic004G267600--Sobic002G417000 Sobic005G032600 Sobic005G032600 Sobic004G267600--Sobic005G032600 Sobic004G267600--Sobic005G062600 Sobic005G062600--Sobic004G267600 Sobic010G092400 Sobic010G092400 Sobic005G062600--Sobic010G092400 Sobic007G121600 Sobic007G121600 Sobic005G062600--Sobic007G121600 Sobic001G079900 Sobic001G079900 Sobic005G062600--Sobic001G079900 Sobic005G062600--Sobic010G129700 Sobic007G161600 Sobic007G161600 Sobic005G062600--Sobic007G161600 Sobic005G062600--Sobic001G493900 Sobic008G070700 Sobic008G070700 Sobic005G062600--Sobic008G070700 Sobic003G019900 Sobic003G019900 Sobic005G062600--Sobic003G019900 Sobic004G315700 Sobic004G315700 Sobic001G487200--Sobic004G315700 Sobic009G212100 Sobic009G212100 Sobic001G487200--Sobic009G212100 Sobic001G487200--Sobic001G369800 Sobic001G231200 Sobic001G231200 Sobic001G487200--Sobic001G231200 Sobic002G370400 Sobic002G370400 Sobic001G487200--Sobic002G370400 Sobic003G226700 Sobic003G226700 Sobic001G487200--Sobic003G226700 Sobic001G487200--Sobic001G540700 Sobic001G296800 Sobic001G296800 Sobic001G487200--Sobic001G296800 Sobic007G084200 Sobic007G084200 Sobic001G487200--Sobic007G084200 Sobic003G183700 Sobic003G183700 Sobic009G172950--Sobic003G183700 Sobic009G087000 Sobic009G087000 Sobic009G172950--Sobic009G087000 Sobic003G032200 Sobic003G032200 Sobic009G172950--Sobic003G032200 Sobic003G444300 Sobic003G444300 Sobic009G172950--Sobic003G444300 Sobic001G083300 Sobic001G083300 Sobic009G172950--Sobic001G083300 Sobic009G184200 Sobic009G184200 Sobic009G172950--Sobic009G184200 Sobic004G321400 Sobic004G321400 Sobic009G172950--Sobic004G321400 Sobic001G105800 Sobic001G105800 Sobic009G172950--Sobic001G105800 Sobic001G146900 Sobic001G146900 Sobic009G172950--Sobic001G146900 Sobic001G369800--Sobic002G284100 Sobic001G369800--Sobic001G487200 Sobic001G369800--Sobic001G123100 Sobic001G369800--Sobic001G540700 Sobic006G218900 Sobic006G218900 Sobic001G369800--Sobic006G218900 Sobic001G369800--Sobic009G212100 Sobic003G283600 Sobic003G283600 Sobic001G369800--Sobic003G283600 Sobic003G351900 Sobic003G351900 Sobic001G369800--Sobic003G351900 Sobic001G212600 Sobic001G212600 Sobic001G369800--Sobic001G212600 Sobic001G540700--Sobic002G284100 Sobic007G197100 Sobic007G197100 Sobic001G540700--Sobic007G197100 Sobic004G207000 Sobic004G207000 Sobic001G540700--Sobic004G207000 Sobic001G540700--Sobic004G267600 Sobic001G540700--Sobic004G315700 Sobic001G540700--Sobic006G272800 Sobic001G540700--Sobic001G487200 Sobic001G540700--Sobic001G369800 Sobic003G345000 Sobic003G345000 Sobic001G540700--Sobic003G345000 Sobic006G272800--Sobic002G284100 Sobic006G272800--Sobic002G027600 Sobic006G272800--Sobic004G267600 Sobic006G272800--Sobic008G070700 Sobic006G272800--Sobic005G032600 Sobic001G468000 Sobic001G468000 Sobic006G272800--Sobic001G468000 Sobic002G006100 Sobic002G006100 Sobic006G272800--Sobic002G006100 Sobic006G272800--Sobic006G142500 Sobic001G158300 Sobic001G158300 Sobic006G272800--Sobic001G158300
Octagon: transcription factors


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