Gene annotation
Transcriptome id Sobic.007G008300.1
Synonym NFB1, FAS2, NFB01, MUB3.9, Sb07g000880
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5YLU4
Pfam PF00400
Panther DB PTHR15271
NCBI CDD KOG1009; Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats)
KEGG Orthology K10751; chromatin assembly factor 1 subunit B
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G64630 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os08g01680.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a040173
Brachypodium KQJ94798 , PNT65647
Barley HORVU7Hr1G077320.2 , HORVU7Hr1G077320.3 , HORVU7Hr1G077320.1 , HORVU7Hr1G077320.6 , HORVU7Hr1G077320.7 , HORVU7Hr1G077320.4 , HORVU7Hr1G077320.5 , HORVU7Hr1G077320.8 , HORVU7Hr1G077320.9 , HORVU7Hr1G077320.10 , HORVU7Hr1G077320.12 , HORVU7Hr1G077320.13 , HORVU7Hr1G077320.14 , HORVU7Hr1G077320.15 , HORVU7Hr1G077320.16 , HORVU7Hr1G077320.17 , HORVU7Hr1G077320.18
Wheat TraesCS7A02G323200 , TraesCS7A02G323200 , TraesCS7B02G224100 , TraesCS7D02G319800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G295400 protein kinase domain containing protein, expressed K02214: cell division control protein 7
2 Sobic.009G172950 - K02541: DNA replication licensing factor MCM3
3 Sobic.004G108400 heavy-metal-associated domain-containing protein, putative, expressed -
4 Sobic.001G105800 OsFBX109 - F-box domain containing protein, expressed -
5 Sobic.003G320300 ZOS1-12 - C2H2 zinc finger protein, expressed -
6 Sobic.009G184200 RecF/RecN/SMC N terminal domain containing protein, expressed K06675: structural maintenance of chromosome 4
7 Sobic.007G007800 DNA repair metallo-beta-lactamase, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
8 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein
9 Sobic.003G055600 expressed protein -
10 Sobic.001G083300 transducin family protein, putative, expressed K02180: cell cycle arrest protein BUB3
11 Sobic.002G223900 OsFBX330 - F-box domain containing protein, expressed -
12 Sobic.006G112800 kinesin motor domain containing protein, expressed K10406: kinesin family member C2/C3
13 Sobic.001G452900 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
14 Sobic.004G321400 BRUSHY 1, putative, expressed -
15 Sobic.002G021200 expressed protein K19001: HELLS, ATP-dependent DNA helicase
16 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
17 Sobic.003G032200 IQ calmodulin-binding motif domain containing protein, expressed -
18 Sobic.007G121600 - -
19 Sobic.001G540900 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
20 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3


Gene co-expression network
sample Sobic007G008300 Sobic007G008300 Sobic001G295400 Sobic001G295400 Sobic007G008300--Sobic001G295400 Sobic009G172950 Sobic009G172950 Sobic007G008300--Sobic009G172950 Sobic004G108400 Sobic004G108400 Sobic007G008300--Sobic004G108400 Sobic001G105800 Sobic001G105800 Sobic007G008300--Sobic001G105800 Sobic003G320300 Sobic003G320300 Sobic007G008300--Sobic003G320300 Sobic009G184200 Sobic009G184200 Sobic007G008300--Sobic009G184200 Sobic007G007800 Sobic007G007800 Sobic007G008300--Sobic007G007800 Sobic001G377700 Sobic001G377700 Sobic007G008300--Sobic001G377700 Sobic003G055600 Sobic003G055600 Sobic007G008300--Sobic003G055600 Sobic001G295400--Sobic007G008300 Sobic001G295400--Sobic001G377700 Sobic005G110535 Sobic005G110535 Sobic001G295400--Sobic005G110535 Sobic001G295400--Sobic004G108400 Sobic002G290000 Sobic002G290000 Sobic001G295400--Sobic002G290000 Sobic003G183700 Sobic003G183700 Sobic001G295400--Sobic003G183700 Sobic002G420000 Sobic002G420000 Sobic001G295400--Sobic002G420000 Sobic001G295400--Sobic003G320300 Sobic006G195500 Sobic006G195500 Sobic001G295400--Sobic006G195500 Sobic009G172950--Sobic003G183700 Sobic009G087000 Sobic009G087000 Sobic009G172950--Sobic009G087000 Sobic003G032200 Sobic003G032200 Sobic009G172950--Sobic003G032200 Sobic003G444300 Sobic003G444300 Sobic009G172950--Sobic003G444300 Sobic001G083300 Sobic001G083300 Sobic009G172950--Sobic001G083300 Sobic009G172950--Sobic009G184200 Sobic004G321400 Sobic004G321400 Sobic009G172950--Sobic004G321400 Sobic009G172950--Sobic001G105800 Sobic001G146900 Sobic001G146900 Sobic009G172950--Sobic001G146900 Sobic001G054700 Sobic001G054700 Sobic004G108400--Sobic001G054700 Sobic006G221300 Sobic006G221300 Sobic004G108400--Sobic006G221300 Sobic009G143200 Sobic009G143200 Sobic004G108400--Sobic009G143200 Sobic001G452900 Sobic001G452900 Sobic004G108400--Sobic001G452900 Sobic004G108400--Sobic007G008300 Sobic009G127800 Sobic009G127800 Sobic004G108400--Sobic009G127800 Sobic007G162400 Sobic007G162400 Sobic004G108400--Sobic007G162400 Sobic002G050700 Sobic002G050700 Sobic004G108400--Sobic002G050700 Sobic009G101100 Sobic009G101100 Sobic004G108400--Sobic009G101100 Sobic001G105800--Sobic007G007800 Sobic002G223900 Sobic002G223900 Sobic001G105800--Sobic002G223900 Sobic001G105800--Sobic009G184200 Sobic001G105800--Sobic003G444300 Sobic003G387700 Sobic003G387700 Sobic001G105800--Sobic003G387700 Sobic001G105800--Sobic001G083300 Sobic001G456500 Sobic001G456500 Sobic001G105800--Sobic001G456500 Sobic010G105400 Sobic010G105400 Sobic001G105800--Sobic010G105400 Sobic001G105800--Sobic009G172950 Sobic003G320300--Sobic007G008300 Sobic003G320300--Sobic004G108400 Sobic010G269700 Sobic010G269700 Sobic003G320300--Sobic010G269700 Sobic003G320300--Sobic001G452900 Sobic003G320300--Sobic009G172950 Sobic005G157300 Sobic005G157300 Sobic003G320300--Sobic005G157300 Sobic003G320300--Sobic001G295400 Sobic003G373900 Sobic003G373900 Sobic003G320300--Sobic003G373900 Sobic004G238801 Sobic004G238801 Sobic003G320300--Sobic004G238801 Sobic002G204400 Sobic002G204400 Sobic009G184200--Sobic002G204400 Sobic009G184200--Sobic010G105400 Sobic001G398400 Sobic001G398400 Sobic009G184200--Sobic001G398400 Sobic003G393100 Sobic003G393100 Sobic009G184200--Sobic003G393100 Sobic010G129700 Sobic010G129700 Sobic009G184200--Sobic010G129700 Sobic009G184200--Sobic003G032200 Sobic001G170800 Sobic001G170800 Sobic009G184200--Sobic001G170800 Sobic009G184200--Sobic007G007800 Sobic003G260700 Sobic003G260700 Sobic009G184200--Sobic003G260700 Sobic002G272300 Sobic002G272300 Sobic007G007800--Sobic002G272300 Sobic007G007800--Sobic001G105800 Sobic007G007800--Sobic009G184200 Sobic001G013400 Sobic001G013400 Sobic007G007800--Sobic001G013400 Sobic007G007800--Sobic002G223900 Sobic004G331600 Sobic004G331600 Sobic007G007800--Sobic004G331600 Sobic005G020100 Sobic005G020100 Sobic007G007800--Sobic005G020100 Sobic010G092400 Sobic010G092400 Sobic007G007800--Sobic010G092400 Sobic007G007800--Sobic001G083300 Sobic001G377700--Sobic002G290000 Sobic002G021200 Sobic002G021200 Sobic001G377700--Sobic002G021200 Sobic001G377700--Sobic003G183700 Sobic001G377700--Sobic005G110535 Sobic001G377700--Sobic003G055600 Sobic001G377700--Sobic006G195500 Sobic007G187700 Sobic007G187700 Sobic001G377700--Sobic007G187700 Sobic007G125300 Sobic007G125300 Sobic001G377700--Sobic007G125300 Sobic001G377700--Sobic005G157300 Sobic003G055600--Sobic001G377700 Sobic003G055600--Sobic005G157300 Sobic003G055600--Sobic009G143200 Sobic003G055600--Sobic003G183700 Sobic003G055600--Sobic004G321400 Sobic003G055600--Sobic009G172950 Sobic003G055600--Sobic002G021200 Sobic003G055600--Sobic005G110535 Sobic003G055600--Sobic007G007800
Octagon: transcription factors


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